Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1923 ATGGAGAAGCACAAATGCAAGCTCTGCTCCAGAACTTTCGCTAATGGCCGATCATTGGGCGGTCACATGAAGGCTCATTTGGCcactctccctctccctcccaagccccacgcgccgccgccgccgccgccgccactactgtctccttctccttctccttctcattCTCTCTCATCTTCCTTCTCATCAGAGGAAAAGGCTCTGATTTATGGGCTCAGAGAGAATCCCAAGAAAAGCATCCGACTCGCGGATCCTGAGTCCCTCATCGTCCAGGACAGAGAGAGCGAGACCGAGTCAAAGAATACTACTTCTACTAACCCCACTCGCCTCCGATCCAAGCGAGCCCGAACCCGAGCCCACCGGCCCACGCTCAagaagcccaagcccaagcccactCCCACCACCACCGAGCCCGAGCCAGCGAGCTCGGTTTCCGATGCTTGTACCGAGGAAGACCTCGCCATGTGCCTGATGATGCTGTCGCGAGACAAATGGATGAGAAATATTGTGAAAGGAGAAGAAGAGACGGAGAAATCGAAGACGAAGAAGCAGCGTTTCGATCTCCGGTGCGATAAGTGTAGAAAAACGTTTCGATCCTCTCGGGCCCTAGAGAGTCACAAGAATGTCTGCTTTCGACAAGCATTGGGAGGGCACAAGAGATCTCATCTCTTACCGTCGTCGTCTTCTTCAAATGTAGCGATCAACGATTCCGGAAGATTGAAATTACAGAGCTTCATAGATCTCAACTTGCCAGCTCcagcagaagaagaagacgaagaactCAGTGTTGTTTCTGATGcgtaa 804 0.4266 MEKHKCKLCSRTFANGRSLGGHMKAHLATLPLPPKPHAPPPPPPPLLSPSPSPSHSLSSSFSSEEKALIYGLRENPKKSIRLADPESLIVQDRESETESKNTTSTNPTRLRSKRARTRAHRPTLKKPKPKPTPTTTEPEPASSVSDACTEEDLAMCLMMLSRDKWMRNIVKGEEETEKSKTKKQRFDLRCDKCRKTFRSSRALESHKNVCFRQALGGHKRSHLLPSSSSSNVAINDSGRLKLQSFIDLNLPAPAEEEDEELSVVSDA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1923 267 MobiDBLite consensus disorder prediction 27 147 - -
Sto11g1923 267 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 267 IPR044303 GO:0006355
Sto11g1923 267 SUPERFAMILY beta-beta-alpha zinc fingers 3 207 IPR036236 -
Sto11g1923 267 Pfam C2H2-type zinc finger 213 222 - -
Sto11g1923 267 Pfam C2H2-type zinc finger 4 28 - -
Sto11g1923 267 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 267 - -
Sto11g1923 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Sto11g1923 267 MobiDBLite consensus disorder prediction 32 51 - -
Sto11g1923 267 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Sto11g1923 267 MobiDBLite consensus disorder prediction 77 99 - -
Sto11g1923 267 SMART c2h2final6 4 26 IPR013087 -
Sto11g1923 267 SMART c2h2final6 188 208 IPR013087 -
Sto11g1923 267 MobiDBLite consensus disorder prediction 111 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1923 Sto-Chr11 17950440 17951339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1923 2 264 C2H2 Transcription Factor Family AT1G02030 34.076 2.67e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto11g1923 zf-C2H2_6 1.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1923 - - qsu:112028002 178.333