Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1906 ATGCGTCAATGGGGGAAATGGGTTTCCGAAATCCGAGAGCCCAAGAAAAAATCCAGAATCTGGCTCGGCACTTTCCCCACTCCCGAAATGGCGGCTCGAGCCCACGACGTAGCCGCCCGAGCCATCAAGGGCACCTCGGCTTTCCTCAACTTCCCCGAGCTAGCCGCGCACCTTCCCCGCCCAGCCACCACTTCCCCCAAGGACATCCAAGCCGCCGCCGCCAAGGCAGCCGCCGCGATTATCGATTACCAGACGACCCGAGCCGAGTCTGAGCCCAGCCAAGCCGACAGCAGCCCGCGCCGGGAATCATCGTCGAATTCGCCGTTGATTGAGGATGACGTGGACGACGAGGATGACGACGACACGTTCTTCGGCCTCCCTGATCTCTTGGTTCACGGCGGCGGCGGCGCCGATGAGTTTCAGTACTCGTCGCTGTGGCTCGTAGCCGGAGGAGCCGATCAGCGAGACTCAGTGGGCCAAGTGGGAGGTGAGCCCCACCATGCACACAACAACTGGGGACTAGAAGAGAACCACACagttgaaaactga 549 0.6047 MRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAARAIKGTSAFLNFPELAAHLPRPATTSPKDIQAAAAKAAAAIIDYQTTRAESEPSQADSSPRRESSSNSPLIEDDVDDEDDDDTFFGLPDLLVHGGGGADEFQYSSLWLVAGGADQRDSVGQVGGEPHHAHNNWGLEENHTVEN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1906 182 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Sto11g1906 182 MobiDBLite consensus disorder prediction 83 122 - -
Sto11g1906 182 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Sto11g1906 182 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
Sto11g1906 182 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Sto11g1906 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 140 - -
Sto11g1906 182 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Sto11g1906 182 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Sto11g1906 182 MobiDBLite consensus disorder prediction 155 182 - -
Sto11g1906 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 1 140 - -
Sto11g1906 182 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1906 Sto-Chr11 17792878 17797939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1906 1 151 AP2-EREBP Transcription Factor Family AT2G44940 48.588 6.31e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto11g1906 AP2 9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1906 - - gmx:100812293 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3413 6 39987684 39990293 Sto11g1906 11 17792878 17797939 CCT