Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1894 ATGATGTTTGGAAAGGAAGATTTTGGTTTGAATCTAAGCTTGAGCTTCCCTCACAATAATAATCTCGTCAAACCCTCTTCAGATCAATGCTCTGAAGCGTGCGGAGTCGGTGAGACTCGGCCGTTCCTCCTGCAAGGGATCATCGACGTGAATCGATTGCCATCGGAGGCCGATTGCGAAGAGGAGGCGGGGGTTTCGTCTCCGAACAGCACGATCTCCAGCGTGATCAGCGGTAAGCGAAATAGCGAGAGAGATCATAGCGGCGATGAGCACGATATGGACAGAGCTTGCTCCTCTCGAGGATTGATCAGCGACGAAGAAGATAACGAAACTTCCAGGAAGAAGCTTAGGCTCTCCAAAGATCAGTCCGCTGTTCTCGAAGAAAGCTTCAAGGAGCACAATACCCTCAATCCCAAGCAAAAATTGGCGCTCGCAAAACAGCTGGGACTACGGCCAAGACAAGTGGAGGTGTGGTTCCAGAATAGAAGGGCAAGGACGAAGCTGAAGCAAACGGAGGTAGACTGTGAGTTCTTGAAAAGATGCTGCGAGAATCTAACGGAGGAGAATAGGCGGTTGCAGAAGGAGGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCACAGTTCTACATGCAAATGACTCCGCCCACTACTCTCACCATGTGCCCTTCCTGCGAGAGGCTCGCGGATCGGCCCATACCCATAGGCCCATGGGCCGCACCGCCTCCCATTTCGgccctccaccaccaccaccaccatcatcatcatcctatTCCTAGATCTTAG 783 0.4943 MMFGKEDFGLNLSLSFPHNNNLVKPSSDQCSEACGVGETRPFLLQGIIDVNRLPSEADCEEEAGVSSPNSTISSVISGKRNSERDHSGDEHDMDRACSSRGLISDEEDNETSRKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERLADRPIPIGPWAAPPPISALHHHHHHHHHPIPRS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1894 260 MobiDBLite consensus disorder prediction 79 119 - -
Sto11g1894 260 SUPERFAMILY Homeodomain-like 97 170 IPR009057 -
Sto11g1894 260 Pfam Homeodomain 113 167 IPR001356 GO:0003677
Sto11g1894 260 Gene3D - 117 167 - -
Sto11g1894 260 MobiDBLite consensus disorder prediction 59 119 - -
Sto11g1894 260 Pfam HD-ZIP protein N terminus 22 82 IPR006712 GO:0005634
Sto11g1894 260 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Sto11g1894 260 MobiDBLite consensus disorder prediction 64 78 - -
Sto11g1894 260 CDD homeodomain 113 170 IPR001356 GO:0003677
Sto11g1894 260 MobiDBLite consensus disorder prediction 245 260 - -
Sto11g1894 260 SMART halz 169 212 IPR003106 GO:0006355|GO:0043565
Sto11g1894 260 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 8 256 - -
Sto11g1894 260 Coils Coil 168 205 - -
Sto11g1894 260 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Sto11g1894 260 PRINTS Lambda-repressor HTH signature 140 149 IPR000047 GO:0003677
Sto11g1894 260 PRINTS Lambda-repressor HTH signature 149 165 IPR000047 GO:0003677
Sto11g1894 260 PANTHER - 8 256 - -
Sto11g1894 260 Pfam Homeobox associated leucine zipper 169 203 IPR003106 GO:0006355|GO:0043565
Sto11g1894 260 MobiDBLite consensus disorder prediction 241 260 - -
Sto11g1894 260 SMART HOX_1 111 173 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1894 Sto-Chr11 17661736 17662948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1894 1 257 Homeobox Transcription Factor Family AT5G47370 60.727 2.01e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto11g1894 HD-ZIP_N 5.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1894 K09338 - tcc:18606217 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3421 6 40039778 40044805 Sto11g1894 11 17661736 17662948 CCT