Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1888 ATGGCGAACCAGCTCGAAATTTCAGCCCTCAATCGCATCAAACTGCATCTTCTAGGCGATCTACTATCCCCAGTGGGCACTTTCAACCCAGAGAACGATGCAACACAACAAATCTGGTTCGGTGAAGCAAATTCTACCTCTGAATCTGAATCTGGATCTCTCCCTTCGCAATCGTCAAGTTCTGAATCTTCCATCGCCGTCTCCGATTACTTCACTGAACCCTTCGAATTCCCCGTCAATTCGATGGATCTATTCGAATCTGAGTCCAAGAACCAAGTGATTGACCTCACAACGCCCAGAACCGAAGCAGAATCAACTTCAATTCCTAGCCCTGGCTTCTTCGAGTTCCAACCTAGGAAGGCGCAATCATCGAATCGGAAACCGTCGTTGCAAATCTCGCTTCCGAAGAAGACCGAGTGGATCCAGTTCGGAAACCTCGATCAACGGCAGGAAGCTCCGGAGAAGCCGGTGCAGAGTGAATCGAACGTCGAAGAGAAGAAACACTACCGAGGAGTCCGTCAGAGGCCGTGGGGCAAGTTCGCGGCCGAGATCCGTGACCCGAACAAGCGTGGATCTAGGGTTTGGCTCGGAACGTTCGATACCGCTATCGAAGCCGCCAAAGCCTACGATCGAGCCGCGTTTAAGCTCCGCGGCGCCAAAGCCATACTCAATTTCCCGCTGGAAGCAGGAACCTCCGGCGCGGAGGAGAGAAAACGCCGGCGGGAGGATGAGGCGGAGGCGGAGGTAGAAGTAAAACCAGTGATGAAGAAGGAGAAAACGACGACGGAATATGACGTAAGAAGTATAAGGGATATTCCGTTAACGCCGTCTAGTTGGACCGGGTTCTGGGATAATGATATAAAGGACATTTTCACAGTCCCGCCGTTGTCACCGTTATCTCCTCACCCGTCGATGGGTTATTCACAACTTATGGttCATGCAAAGAAGAGCAACTGCCAAGATTTTTAG 969 0.5129 MANQLEISALNRIKLHLLGDLLSPVGTFNPENDATQQIWFGEANSTSESESGSLPSQSSSSESSIAVSDYFTEPFEFPVNSMDLFESESKNQVIDLTTPRTEAESTSIPSPGFFEFQPRKAQSSNRKPSLQISLPKKTEWIQFGNLDQRQEAPEKPVQSESNVEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGAKAILNFPLEAGTSGAEERKRRREDEAEAEVEVKPVMKKEKTTTEYDVRSIRDIPLTPSSWTGFWDNDIKDIFTVPPLSPLSPHPSMGYSQLMVHAKKSNCQDF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1888 322 MobiDBLite consensus disorder prediction 44 65 - -
Sto11g1888 322 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Sto11g1888 322 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 298 - -
Sto11g1888 322 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Sto11g1888 322 SUPERFAMILY DNA-binding domain 168 227 IPR016177 GO:0003677
Sto11g1888 322 CDD AP2 167 226 IPR001471 GO:0003700|GO:0006355
Sto11g1888 322 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Sto11g1888 322 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Sto11g1888 322 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Sto11g1888 322 MobiDBLite consensus disorder prediction 99 130 - -
Sto11g1888 322 MobiDBLite consensus disorder prediction 146 170 - -
Sto11g1888 322 Pfam AP2 domain 168 218 IPR001471 GO:0003700|GO:0006355
Sto11g1888 322 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 4 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1888 Sto-Chr11 17603807 17605013 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1888 82 312 AP2-EREBP Transcription Factor Family AT5G47230 52.590 2.41e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto11g1888 AP2 6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1888 K09286 - gmx:100808173 280.026