Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1872 ATGTATAATTTTGAGTCAGttctaagtgttcaagaatcaGGACATAGCAAATGCACTGCAACAGACACACCGCTTTGGCGCAATGGGCCACCAGAGAAGCCAGTActatgcaatgcatgtggatcTCGATGGAGGACAAAGGGGACACTTGCAAATTATACCCCTTTGCATGCTCGGGCAGAAAATGATGATTATGAGGATCCAAGGCATTCCAGGGCAAAAAGCGTATCATTAAACAAGAACAAAGAAGTGAAATTGCTCAAACGAAAGCACAACCATGATAATGTAGTATCTGGATGGGTTGCACCTGAGTACAACCAGGGATTCCGAAAGGTTATAGATGAAGATACAAGCAATAGATCAAGTTCCGGATCAGCAGTCTCTAACTCGGAGAGCTGCGCTCAATTTGCTGGCACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTTGTGTGGGATGCCACAGTGCCTTCGAAAAAGAGGACGTGTGTAAGTCGTCAAAAGGCATCTTCTGTTGAGAAGCTCACAAAAGATTTATATACCATTCTTCACGAACAGCAGTCTTATTTCTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACCCCGATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTTATTAGGCATCCTAGTACTATAGCTCGTGAAGAAGAATCTGAGGCTAGCTCACTTTCAGTTGATAACAAACAATGCCCAACGAGTGAGGCATTTTCATGCTCTGGTACCATGCATATACATAATGATTTCACTGGCATGAACTTTTCATCCCTGGGAGTTGAAAAGTTCAAGTCCTCTGCTAGCCAAGGAAATCAGCAGGAGAAACTTCAAAGGCaagtttctattttctattttgcaTGCTCCTCGAAAAGACAGTCCATGATGATGGACAAGTTTCCACAAGAAAATATACAAATCCTTGGTTCTCATAATTCACCACTGTGCTCAATAGATTTAAACGATGTTGTAAACTATGAAGTGTTTATGAGGAGCTTGACAAATGAAGAGCAGCAACAATTACTGAAGTGTCTCCCAGGGGTTGATACTGCTAAACTTCCTGACAGCTTTAAAAGCATGTTCAATAGCTGTCAATTTGAGGAGAACTTAACATACTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGATATCTCTTTATCAGGGGCAAAACCTGAAGACTGCCGGACTTTGAAACGACTTGCATTGTCCGATCTGTCACAGTCGAAATGGGTTTTACAATATGATTTACTTAAGAGTTGTAAATACAGACCTGAAAAATGTGTCGCTCTGGGATCTACTGGCAACGCTTCAAGTAATGTGGCAATTGGGAAGAGATTGCGTGACAGcccaaaacaaaattttcctgAAGTGAAGGCAGTGGTTAGGAGCCCCAAAAGGGTGATCATGAAGGCAGGCTGTGAGGGCAAGGAGGTTTTAGAAGATGGCTCTTACTTCAGTCCAAAAAGCCTATTTGCTTTGCCTCCCGATGGTGGCTCGCTCATGCTGGATACTTTCAACTTCGTTGAGGAGAGTTCCGATCAGGATCTCCTGCTCGAAGTGCGATCCAACAGTTCATTTCCAGAAGCCGAGCTACTGCACCCAACTTTAAGCTTTGGAGCTCAAGCCAGCACCACCAGTAGTAGCTCAGTATACCAACATCTTGCCCATCCCTGA 1704 0.4178 MYNFESVLSVQESGHSKCTATDTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENDDYEDPRHSRAKSVSLNKNKEVKLLKRKHNHDNVVSGWVAPEYNQGFRKVIDEDTSNRSSSGSAVSNSESCAQFAGTDASDLTGPAQSVVWDATVPSKKRTCVSRQKASSVEKLTKDLYTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSTIAREEESEASSLSVDNKQCPTSEAFSCSGTMHIHNDFTGMNFSSLGVEKFKSSASQGNQQEKLQRQVSIFYFACSSKRQSMMMDKFPQENIQILGSHNSPLCSIDLNDVVNYEVFMRSLTNEEQQQLLKCLPGVDTAKLPDSFKSMFNSCQFEENLTYFQQLLGEGVFDISLSGAKPEDCRTLKRLALSDLSQSKWVLQYDLLKSCKYRPEKCVALGSTGNASSNVAIGKRLRDSPKQNFPEVKAVVRSPKRVIMKAGCEGKEVLEDGSYFSPKSLFALPPDGGSLMLDTFNFVEESSDQDLLLEVRSNSSFPEAELLHPTLSFGAQASTTSSSSVYQHLAHP 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1872 567 PANTHER OSJNBB0038F03.10 PROTEIN 17 567 IPR044589 -
Sto11g1872 567 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 17 567 - -
Sto11g1872 567 SMART GATA_3 9 61 IPR000679 GO:0006355|GO:0043565
Sto11g1872 567 CDD ZnF_GATA 18 72 IPR000679 GO:0006355|GO:0043565
Sto11g1872 567 Pfam Asx homology domain 316 393 IPR028020 -
Sto11g1872 567 ProSiteProfiles GATA-type zinc finger domain profile. 16 48 IPR000679 GO:0006355|GO:0043565
Sto11g1872 567 Pfam GATA zinc finger 17 49 IPR000679 GO:0006355|GO:0043565
Sto11g1872 567 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Sto11g1872 567 Gene3D - 16 95 IPR013088 GO:0006355|GO:0008270
Sto11g1872 567 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 321 432 IPR044867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1872 Sto-Chr11 17453689 17458704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1872 18 543 C2C2-Gata Transcription Factor Family AT4G17570 50.558 5.53e-142 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto11g1872 ASXH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1872 - - gmx:100798504 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3447 6 40199788 40204319 Sto11g1872 11 17453689 17458704 CCT