Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1856 ATGGCTGTTCAAGCTCAATACCCTTCCAATGTCCTTCTTCTGAACAACAGAAACGGACAAGAAGGTTATGACTACTCGTTACAACCACAACCTGGAGGAGCtacaggaggaggaggaggaatccTTGATCAATCTCATATGTTATTCAACAATGGAGGCAGTACGAATTCTCGCAAGAGAGCAAGAGAAAGTACAACTCCGAGGGCGATTTCTCAGGCTCCGGCGCCTAACGTTTTGAATTCATTCTCTCTGCAATCACAATCACAGCCTCAGCCTCCTCAACTCATTCACCTCTCGCATCTCCATCATCATCAGCAACAAAATGGAGTCTCCACCGGCCTTCGCTTGTCTTCCTCCTTCGCCGACCACCaccatcaacaacaacaacaacaagatGCTTCTCACTCCTCTGCTTTCGCATCATCACTCTTATCTCGAGATTTCGCCTCCCAAATCAAACAACAGAGAGACGAAATTCACCAATTTCTTCAAGCGCagGAAGAGCAATTGCGCAGGACATTAACGGAGAAGAGGCAGAGGCATTACCGGGCGCTAATATCCGCGGCGGAGGAGACGGTGGCCCGGCGGTTGAGGGAGAAGGAAATGGAGGTAGAGAAAGCGACGCGGAGGAACGCGGAGTTAGAGGCACGCGCGGCGCAACTTAGCGCGGAGGCGCAGGTTTGGCAGGCGAAGGCCAAAGCGCAGGAAGCAACGGCGGCTTCTTTACAGGCCCAACTGCAGCAGGCTATGAtgagcggcggcggcggcggtatGGGCACGGCGGAGGAGGTAGGGCTGTCGTGCGCGGAGGGCGGCGCCGGGCAAGCCGAGGACGCCGAGTCGGCTTACGTTGACCCGGAACGGGTCGGGTCGGGTGGCGGGCCGAAATGTAGAGGGTGTGGGAAGCGAGTGGCTTCAGTGGTGGTATTGCCGTGTCGGCATCTGTGCATGTGTACCAAATGCGACGCGCATTTCCGAGCGTGCCCTGTTTGTCTCAACCTCAAAAATTCTACCGTTGAGGTTTATCTATCTTAG 1035 0.5082 MAVQAQYPSNVLLLNNRNGQEGYDYSLQPQPGGATGGGGGILDQSHMLFNNGGSTNSRKRARESTTPRAISQAPAPNVLNSFSLQSQSQPQPPQLIHLSHLHHHQQQNGVSTGLRLSSSFADHHHQQQQQQDASHSSAFASSLLSRDFASQIKQQRDEIHQFLQAQEEQLRRTLTEKRQRHYRALISAAEETVARRLREKEMEVEKATRRNAELEARAAQLSAEAQVWQAKAKAQEATAASLQAQLQQAMMSGGGGGMGTAEEVGLSCAEGGAGQAEDAESAYVDPERVGSGGGPKCRGCGKRVASVVVLPCRHLCMCTKCDAHFRACPVCLNLKNSTVEVYLS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1856 344 Coils Coil 190 252 - -
Sto11g1856 344 MobiDBLite consensus disorder prediction 47 76 - -
Sto11g1856 344 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 343 - -
Sto11g1856 344 Coils Coil 160 180 - -
Sto11g1856 344 MobiDBLite consensus disorder prediction 22 76 - -
Sto11g1856 344 PIRSF SBP1_RNase_bind 1 344 IPR017066 -
Sto11g1856 344 Pfam Zinc finger, C3HC4 type (RING finger) 296 331 - -
Sto11g1856 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 344 IPR013083 -
Sto11g1856 344 ProSiteProfiles Zinc finger RING-type profile. 297 331 IPR001841 -
Sto11g1856 344 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 343 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1856 Sto-Chr11 17306111 17307337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1856 291 331 C3H Transcription Factor Family AT3G06140 44.444 8.24e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1856 K19042 - gmx:100779548 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3477 6 40404832 40406135 Sto11g1856 11 17306111 17307337 CCT