Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1849 ATGCAAACTCTGGCAGATACTTCATTTGTTAATTCTCGAGCATCTTACTACCCTAATTCTCAAGAAAATGGAACTGACGTTGGCGCATGTGGGTTTGGTTCCTTTGGTGCTACTGTCAATGGTGGAGACGTATCAGCTGCTTCTGCTCTTTACCGTGACGGTGTCGGCTGTGGCGCTTGTTATCAGGTGAGATGTAGCGACAGTAAGTATTGCTCAGAAAATGGTGTGACCATAGTGATAACGGACCAAGGCTACCCAAACAAAAACATCACAATTAAGATACATGAAAGCAGCAGCAACCCTCACTACTTGGCCTTTGTCATATGGTATCAGCAAGGACAGAGAGATATAACTGCTGTGCACCTCTGTGAGACTCAGAACTTTGCCTGCAAGTTACTAGATAGGAGCCATGGAGCTGTGTGGACTACAAACTCTCCACCTAGTGGACCTTTGTCTTTAAGGATGTTGTTTAGTGATGATGATGGAGAAGACACTTGGGTTGTCCCTGTTAATAACATACCCCAAGACTGGAAGGCTGGAGAAACATATGACTCTGGAGTGCAAGTCAACCAATAA 576 0.4479 MQTLADTSFVNSRASYYPNSQENGTDVGACGFGSFGATVNGGDVSAASALYRDGVGCGACYQVRCSDSKYCSENGVTIVITDQGYPNKNITIKIHESSSNPHYLAFVIWYQQGQRDITAVHLCETQNFACKLLDRSHGAVWTTNSPPSGPLSLRMLFSDDDGEDTWVVPVNNIPQDWKAGETYDSGVQVNQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1849 191 SUPERFAMILY Barwin-like endoglucanases 5 86 IPR036908 -
Sto11g1849 191 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 102 185 IPR007117 -
Sto11g1849 191 PRINTS Expansin/Lol pI family signature 8 23 IPR007118 GO:0005576
Sto11g1849 191 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Sto11g1849 191 PRINTS Expansin/Lol pI family signature 166 180 IPR007118 GO:0005576
Sto11g1849 191 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 7 84 - -
Sto11g1849 191 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 85 190 - -
Sto11g1849 191 Gene3D - 85 189 IPR036749 -
Sto11g1849 191 Pfam Lytic transglycolase 47 91 IPR009009 -
Sto11g1849 191 Pfam Expansin C-terminal domain 90 170 IPR007117 -
Sto11g1849 191 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 135 IPR007112 -
Sto11g1849 191 PANTHER EXPANSIN-B3 7 84 - -
Sto11g1849 191 PANTHER EXPANSIN-B3 85 190 - -
Sto11g1849 191 SUPERFAMILY PHL pollen allergen 88 185 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1849 Sto-Chr11 17223368 17226104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1849 9 189 Expansin Gene Family AT4G17030 37.054 1.20e-40 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1849 - - gmx:100794009 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1849 11 17223368 17226104 Sto11g1849 11 17223368 17226104 ECH