Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1843 ATGGAAAAATTACTTTACAAAGAAGTTGTAGAGAGGTTGAATGGTCTCATTGACCTTTACAGAAAAGGGCAGCTTCCTATTTCTATTTTGCGGTCCAGGAATGGTGCCAAACCAGCTATGGTTTGCACTGCAAACGATTTACAGGAGTGGAAAGATTTTCCAAAGGGACTTAGGATTCTTCTCCTTGATGGAGACAGCACTTCTGCTTCAGAGATAAGAACAAAGCTTGAGGCGATGGACTATATCGTTTCGACTTTCTGTGACGAAAATGAAGCCTTGTCGGCAATTTCAAGCAGACCTGAAAGTTTCCATGCTGCCATAGTGGAGGTAAGTACCAGCAGTAGCCCAGGAAGCTTCAAATTTCTTGAGAATGCTAAGGACTTGCCAACTATTATGACTTCAAACAATCATTGCTTAAGCACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTAAGCAAACCACTCTCCGAGGAAAAACTCAGGAACATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGACAAGTATCCTGTCTGAATCACTAAAACCCGTCAAAGAATCCGTGGTATCGTTGTTGAATCTCCAAACACACAGTGAAAAACATGAAAGTAGAATCTCAATAGATCTAGAGAAGGTATCTAGGTTTAGTGATAATGACCATGAGGTTTCAGCAGGAAGTGATAAATATCCAGCTCCTTCAACACCGCAGTTAAAACGGAGTGCAAGATTACTGGACGATGGGGATTGCCAGGAACAAACTAATTGTTCAACAGAAAAAGAAAGTGGGGACCATGATGGGGAATCTAAATCTGTAGACACTACATGTGGAGTTTTGAATGCTGAAGGTACTTGTCAACCAATAAAACCCGAAAAGCCTCTGAAAATGGAGGAAGAGAACTTTGCAAATGATCCTAAAAGTGTAAATATTGCTGGTTCTCCACATCTACATGATGGAAAGGTTCTCAGTAACATTGATGACAGTACTGCTTCTCCAAATAAAACAGGCATTCTTAGTGATTCGTGTCGAATGAAAACTAATCGGAAGAAGATTAAGGTAGATTGGACACCTCGGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGTTTGGATCAAGCAATTCCTTCTCGAATACTCGAGCTGATGAAAGTAGAGGGCTTGACAAGGCATAATGTGGCTAGCCATCTTCAGAAATATAGAATGCGAAAGAGGCAAATTTTGCCAAAGGATGATCGAAAATGGTTACAAAGACCAATTATGCCCTTCCCTCCATATTATTCTAATCACACCTTATCACCAGCTCCTTTGTATCCTCTTTGGGGACAGTCTAGCAGTCAACCAACCGGTGTGCATTTATGGCCGCCCGGTTATCCTCTGTGGCAGCCTGTAGAAAGTTGGCACTGGAAGCCTTTTCCAAGGATGCATGCAGATGCATGGGGTTGTCCAATATTACCACCCACTCAAGGTCCTTCTTTTTCCTGCTCTCAGAATATACCTGGATCTCACAAGGCTGATAATGCTGTTGGTTGTAGCTCTAGCAAGTCAGGAATCTTCTTTGAATATCATCCAGCTGAGGAAGTAGTTGACAAGATAGTGAAGGAAGCAATAAGCAAGCCATGGCTTCCAATGCCCTTAGGCCTCAAACCTCCTTCCACAGATAGTGTATTGGCTGAGCTCTCTAGGCGAGGCATATCCACCATCCCTCCTCGCACCATTAAGCCTTCTAAACGCCATcgacctcctcctcctcctccagaTCACAAGCATATTGCTACATAG 1797 0.4246 MEKLLYKEVVERLNGLIDLYRKGQLPISILRSRNGAKPAMVCTANDLQEWKDFPKGLRILLLDGDSTSASEIRTKLEAMDYIVSTFCDENEALSAISSRPESFHAAIVEVSTSSSPGSFKFLENAKDLPTIMTSNNHCLSTMMKCIALGAVEFLSKPLSEEKLRNIWQHVVHKAFNAGTSILSESLKPVKESVVSLLNLQTHSEKHESRISIDLEKVSRFSDNDHEVSAGSDKYPAPSTPQLKRSARLLDDGDCQEQTNCSTEKESGDHDGESKSVDTTCGVLNAEGTCQPIKPEKPLKMEEENFANDPKSVNIAGSPHLHDGKVLSNIDDSTASPNKTGILSDSCRMKTNRKKIKVDWTPRLHKKFVKAVEQLGLDQAIPSRILELMKVEGLTRHNVASHLQKYRMRKRQILPKDDRKWLQRPIMPFPPYYSNHTLSPAPLYPLWGQSSSQPTGVHLWPPGYPLWQPVESWHWKPFPRMHADAWGCPILPPTQGPSFSCSQNIPGSHKADNAVGCSSSKSGIFFEYHPAEEVVDKIVKEAISKPWLPMPLGLKPPSTDSVLAELSRRGISTIPPRTIKPSKRHRPPPPPPDHKHIAT 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1843 598 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 354 409 IPR006447 GO:0003677
Sto11g1843 598 Gene3D - 57 179 - -
Sto11g1843 598 ProSiteProfiles Response regulatory domain profile. 58 171 IPR001789 GO:0000160
Sto11g1843 598 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 40 579 - -
Sto11g1843 598 SUPERFAMILY CheY-like 55 173 IPR011006 -
Sto11g1843 598 PANTHER TRANSCRIPTION ACTIVATOR GLK1 40 579 IPR044825 GO:0003700|GO:0045893
Sto11g1843 598 Gene3D - 350 412 - -
Sto11g1843 598 Pfam Myb-like DNA-binding domain 357 406 IPR001005 -
Sto11g1843 598 SUPERFAMILY Homeodomain-like 353 411 IPR009057 -
Sto11g1843 598 MobiDBLite consensus disorder prediction 562 598 - -
Sto11g1843 598 MobiDBLite consensus disorder prediction 248 276 - -
Sto11g1843 598 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 351 410 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1843 Sto-Chr11 17156772 17162147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1843 40 585 Response Regulator Gene Family AT4G18020 50.258 1.47e-149 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sto11g1843 Myb_DNA-binding 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1843 - - gmx:100777535 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3500 6 40613109 40618073 Sto11g1843 11 17156772 17162147 CCT