Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1823 ATGAGGCCGGAGACGGAGAAAATATTTATCACTAAGGACGATGATGGGTCCTTGAGATCGCCGTTTCATATCAATTCACCGTCGTCCTCCTTCAACGGCAACGTGATGGGTTTCACTAGAAGGGAAAAGCACATCCGAGCGACTCGGAGTCATCGATCACCCAAAGCCGGTACAGATTCTGGCGAAAAAACTCCCGTCTCGAAATCTATACTGGAATCTAGCCTCAAGGAGTTCAAAAACCAAATGTTTCTCAACGATTCATCTCCAAATCCAAATTCTAGATCTGCCTTTAACCCTAGCCGAGAGGGAACCGGCTTACGTAACTGCACCGAAGAACAATTAGAAGCAATTTTATTGGAAGCCTTGGAATCTCAATACAATGAAGCTCTATCGAAGCTTGTTCAAATGGGCTATGACAAGGATGTTGCTCTCAGAGCAATATTGCGAAATGGACATTGTTTTGGTGATAAGGatgtgttaaaaaatatattgcaTAACACATTGGCTTATTTGAATAGTAATGATAGTAGTGCTAGTAATGATGAAAATCCGGATGATTCTGAACCTATTTTCTCAGACTTAAGGCAGCTGGTGGAGCAGTCTCTGGCTGCTATGCTCGGTTTGTTGAAACAAATCAAGCCAAATTTGAGTAGAGGCGATGTCCTGTGGTCTTTGGTTATGAATGATCTTCATGTATTACGGGCGAGCTCTGTGGAATCTCCAGTGCTTCCAGTTCAAGGAGTTGCTTGCCCTGATCCTAGTACTGCTGAGGCTGTTAGTAGGTTTCATGGAGGAGGATCAGATCTTCCCGTGAGTGGGTTCTCCTCTCACGGTTCAAATCTGACTTTACAAAGGCCTATCGAATTTCCTAAGAGGCTTGATCTTTCTCCTTCAACGAAGCTTTTATTGAAAAGAAATGTTGCAACGTTTGCTGCTGGTTTCAGGGCAAATTCAGAACAATTACATACACGAGCTATGTCTTGTTCGAGTTTGGATTCTCCACCTGTATCTGGGAATGATGTCCCAACTGAGCAGTCTGGGGATTCTCAGAATCTGAATAATCAAGATTCTGTGAACTCAATGAAGAAGGATGAGGTGAATCAGGCAATAGTCAATATACTTAATCAAATTAAGGAGCTCGAGAATGAggtaaagaaacaaaaagaatgGGCCCATGAGAAGGCAGTACAAAGTGCAAGGAGTCTAAGTAATGGTATGATTGAACTGAAACTTTTGAAGATGGAAAAAGAGGAGACTCAGAGATTGATGAAAGGGAAACATGCAATTGAGGACACAACCATGAAAAGACTCTCAGAGATGGAGAATTCTTTGAGAAGGACAATTGGCCAAGTGAACCGTGCAAATGCAGCTGTGAGGCGACTTGAGGTAGAGAATGCAGAAATCAGAGCAGATTTGGAGGCTTCTAAATTAAGTGCTTCAGAATCAGACGCAGCTTGCTCGAACATtgtaaaaagagagaaaaagtacaTGAAGAAGATTCTTGCTTGGGAAAAAGTGAAAGCTCAACTACAACAGGAGATTTctgatgaaaaagagaagatatTGCAGATAGAGGAAGAGTTGGTCCGGATTAAAAAGTGTCAGAAAGATGCAGAGGTTAAGTGGAGGGAGGAGTTGAAGGCTAAGGAAGAAGCATTTAGCCTAGTTGGGGAGGAGCGACGCTCTAAGGAAGCTGTTGAGGCTGATAATAAGAGGAAGCTTGAGGTGTTGCGGCTCAAGATAGAGATAGATTTCCAGCGCCACAAAGATGATCTCTCAAGACTTGAGCAGGAGCTGTCACGCCTCAGAGCTTCTTCCGAATCGAATACTTCGCCTTCTGAGGGTGCAAAGACCGAAAGAGAGACAATTGCTAAGTTGCTTCAAGAATTAGAAAAGCTGGAGGATTCTTCCAATAAGGAAGTCAGCAGTGACAGGGAATGCGTAATATGCATGAAAGATGAAGTGTCTGTTGTTTTCTTGCCTTGTGCTCACCAAGTTATGTGTGCTAGTTGCAGTGATGCGTATGGGGGAAAGGCTAAAGCTGCTTGTCCTTGCTGCCATGTTCCCATTGAGCAGAGGATTCGTGTATTCGGGGCGAGTTCTACCTGA 2109 0.422 MRPETEKIFITKDDDGSLRSPFHINSPSSSFNGNVMGFTRREKHIRATRSHRSPKAGTDSGEKTPVSKSILESSLKEFKNQMFLNDSSPNPNSRSAFNPSREGTGLRNCTEEQLEAILLEALESQYNEALSKLVQMGYDKDVALRAILRNGHCFGDKDVLKNILHNTLAYLNSNDSSASNDENPDDSEPIFSDLRQLVEQSLAAMLGLLKQIKPNLSRGDVLWSLVMNDLHVLRASSVESPVLPVQGVACPDPSTAEAVSRFHGGGSDLPVSGFSSHGSNLTLQRPIEFPKRLDLSPSTKLLLKRNVATFAAGFRANSEQLHTRAMSCSSLDSPPVSGNDVPTEQSGDSQNLNNQDSVNSMKKDEVNQAIVNILNQIKELENEVKKQKEWAHEKAVQSARSLSNGMIELKLLKMEKEETQRLMKGKHAIEDTTMKRLSEMENSLRRTIGQVNRANAAVRRLEVENAEIRADLEASKLSASESDAACSNIVKREKKYMKKILAWEKVKAQLQQEISDEKEKILQIEEELVRIKKCQKDAEVKWREELKAKEEAFSLVGEERRSKEAVEADNKRKLEVLRLKIEIDFQRHKDDLSRLEQELSRLRASSESNTSPSEGAKTERETIAKLLQELEKLEDSSNKEVSSDRECVICMKDEVSVVFLPCAHQVMCASCSDAYGGKAKAACPCCHVPIEQRIRVFGASST 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1823 702 Coils Coil 616 636 - -
Sto11g1823 702 Pfam Family of unknown function (DUF6592) 122 237 IPR046527 -
Sto11g1823 702 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 700 - -
Sto11g1823 702 MobiDBLite consensus disorder prediction 21 36 - -
Sto11g1823 702 Coils Coil 500 527 - -
Sto11g1823 702 MobiDBLite consensus disorder prediction 602 617 - -
Sto11g1823 702 MobiDBLite consensus disorder prediction 601 620 - -
Sto11g1823 702 Coils Coil 444 478 - -
Sto11g1823 702 MobiDBLite consensus disorder prediction 1 19 - -
Sto11g1823 702 Pfam Zinc finger, C3HC4 type (RING finger) 644 692 - -
Sto11g1823 702 PANTHER OS05G0141500 PROTEIN 36 700 IPR046934 -
Sto11g1823 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 698 IPR013083 -
Sto11g1823 702 SMART ring_2 647 686 IPR001841 -
Sto11g1823 702 MobiDBLite consensus disorder prediction 325 357 - -
Sto11g1823 702 Coils Coil 363 390 - -
Sto11g1823 702 MobiDBLite consensus disorder prediction 82 106 - -
Sto11g1823 702 ProSiteProfiles Zinc finger RING-type profile. 647 687 IPR001841 -
Sto11g1823 702 MobiDBLite consensus disorder prediction 1 66 - -
Sto11g1823 702 Coils Coil 578 605 - -
Sto11g1823 702 SUPERFAMILY RING/U-box 639 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1823 Sto-Chr11 16939985 16950420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1823 595 697 C3H Transcription Factor Family AT1G73950 36.893 7.97e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1823 - - gmx:100777787 766.918