Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1822 ATGGGTTTCACTAGAAGGGAAAAGCACATCCGAGCGACTCGGAGTCATCGATCACCCAAAGCCGATACGAATTCTGGCGACAAAACTCCCGTCTCGAAATCTATACTGGAATCTAGCTCTGCCTTTAACCCTAGCCGAGAGGGAACCGGCTTCCGTAACTGCACCGAAGAACAATTAGAAGCAATTTTATTGGAATCCTTGGAATCTCAATACAATGAAGCTCTATCGAAGCTTGTTCAAATGGGCTATGACAAGGATGTTGCTCTCAGAGCAATATTGCGAAATGGACATTGTTATGGTGATAAGGATGTGTTAAACAATATATTGCATAACACATTGGCTTATTTGAATAGTAATGATAGTAGTGCTAATAATGATGAAAATCTGGATGATTCTGAACCTATTTTCTCAGACTTAAGGCAGCTGGTGGAGCAGTCTCTGGCTGCTATGCTCGGTTCGGCGAAACGAATCAAGCCAAATTTGAGTAGAGGCGATGTCCTGTGGTGTTTGGTTATGAATGATCTTCATGTATTACGGGCGAGCTCTGTGGAATCTCCAGTGCTTCCAGTTCAAGGAGTTGCTTGCCCTGCTCCTAGTACTGCTGAGGCTGTTAGTAGGTTTCATGGAGGAGGCTCAGATCTTCCCGTGAGTGGGTTCTCCTCTCACGGTTCAAATCTGACTTTACAAAGGCCTATCGAATTTCCTAAGAGGCTTGATCTTTCTCCTTCAACGAAGCTTTTATTGAAAAGAAATGTTGCAACGTTTGCTGCTGGTTTCAGGGCAAATTCAGAACAATTGCAGACACGAGCTATGTCCTGTTCGAGTTTGGATTCTCCACCTGTATCTGGGAATGATGTCGAAGCTGAGCAATCTGGGGATTCTCAGAATCTGAATAATCAAGATTCTGTGAACTCAATGGTTAGTAAATTTTGTGATCTGAATATTGATGAGAGTTTGGAATTTTTTAAAGGAGATCAGAAGAAGGATGAAGTGAATCAGGCGATAGTCAATATGCTTAATCAGATTAAGGAGCTCGAGAATGAggtaaagaaacaaaaagaatgGGCCCATGAGAAGGCAGTGCAAAGTGCAAGGAGTCTAAGTAATGGTACAATTGAACTGAAACTTTTGAGGATGGAAAAAGAGGAGACTCGGAGATTGATGAAAGGGAAACATGCAATTGAGGACACAACCATGGAAAGACTCTCAGAGATGGAGAATGCTTTGAGAAGGGCAATTGGCCAAGTGAACCGTGCAAATGCAGCTGTGAGGCGACTTGAGGCAGAGAATGCAGAAATCAGAGCAGATTTGGAGGCTTCTAAATTAAGTGCTTCAGAATCAGACGCAGCTTGCTCGAACATtgtaaaaagagagaaaaagtacaTGAAGAAGATTCTTGCTTGGGAAAAATTGAAAGCTCAACTACAACAGGAGATTTctgatgaaaaagagaagatatTGCAGATACAGGAAGAGCTGGTCCGGATTAAAAAGTGTCAGAAAGATGCAGAGTTACTGTCTGGTGCCTCTTTAGTTTTCTTTCAAGTTAAGTGGATGGAGGAGTTGAAGGCTAAGGAAGAAGCATTTGGCCTAGTTGGGGAGGAGCAACGCTCCAAGGAAGCCGTTGAGGCTGATAATAGGAGGAAGCTTGAGGTGTTGCGGCTCAAGATAGAGATGGATTTCCAGCGCCACAGAGATGATCTCTCTAGACTTGAGCAGGAGCTGTCATGCCTCAGAGCTTCTTCCGAATCGAATACTTCGCCTTCTGAGGGTGCAAAGACCGAAAGAGAGGCAATTGCTAAGCTGCTTCAAGAATTAGAAAAGCTGGAGGATTCTTCCAATAAGGAAGTCAGCAGTGACAGGGAATGCGTAATATGCATGAAAGATGAAGTGTCTGTTGTTTTCTTGCCTTGTGCTCACCAAGTTATGTGTGCTAGTTGCAGTGATGCGTATGGGGGAAAGGCTAAAGCTGCTTGTCCTTGCTGCCATGTTCCCATTGAGCAGAGGATCCGCGTATTCGGGGCGAGTTCTACCTGA 2037 0.4291 MGFTRREKHIRATRSHRSPKADTNSGDKTPVSKSILESSSAFNPSREGTGFRNCTEEQLEAILLESLESQYNEALSKLVQMGYDKDVALRAILRNGHCYGDKDVLNNILHNTLAYLNSNDSSANNDENLDDSEPIFSDLRQLVEQSLAAMLGSAKRIKPNLSRGDVLWCLVMNDLHVLRASSVESPVLPVQGVACPAPSTAEAVSRFHGGGSDLPVSGFSSHGSNLTLQRPIEFPKRLDLSPSTKLLLKRNVATFAAGFRANSEQLQTRAMSCSSLDSPPVSGNDVEAEQSGDSQNLNNQDSVNSMVSKFCDLNIDESLEFFKGDQKKDEVNQAIVNMLNQIKELENEVKKQKEWAHEKAVQSARSLSNGTIELKLLRMEKEETRRLMKGKHAIEDTTMERLSEMENALRRAIGQVNRANAAVRRLEAENAEIRADLEASKLSASESDAACSNIVKREKKYMKKILAWEKLKAQLQQEISDEKEKILQIQEELVRIKKCQKDAELLSGASLVFFQVKWMEELKAKEEAFGLVGEEQRSKEAVEADNRRKLEVLRLKIEMDFQRHRDDLSRLEQELSCLRASSESNTSPSEGAKTEREAIAKLLQELEKLEDSSNKEVSSDRECVICMKDEVSVVFLPCAHQVMCASCSDAYGGKAKAACPCCHVPIEQRIRVFGASST 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1822 678 Coils Coil 589 612 - -
Sto11g1822 678 SUPERFAMILY RING/U-box 615 669 - -
Sto11g1822 678 Pfam Family of unknown function (DUF6592) 67 182 IPR046527 -
Sto11g1822 678 PANTHER OS05G0141500 PROTEIN 1 676 IPR046934 -
Sto11g1822 678 MobiDBLite consensus disorder prediction 270 301 - -
Sto11g1822 678 ProSiteProfiles Zinc finger RING-type profile. 623 663 IPR001841 -
Sto11g1822 678 SMART ring_2 623 662 IPR001841 -
Sto11g1822 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 674 IPR013083 -
Sto11g1822 678 Coils Coil 328 355 - -
Sto11g1822 678 MobiDBLite consensus disorder prediction 1 51 - -
Sto11g1822 678 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 66 111 IPR015940 -
Sto11g1822 678 Coils Coil 465 492 - -
Sto11g1822 678 MobiDBLite consensus disorder prediction 24 51 - -
Sto11g1822 678 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 676 - -
Sto11g1822 678 Coils Coil 402 443 - -
Sto11g1822 678 Coils Coil 554 581 - -
Sto11g1822 678 Pfam Zinc finger, C3HC4 type (RING finger) 620 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1822 Sto-Chr11 16935643 16938631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1822 591 673 C3H Transcription Factor Family AT1G73950 39.759 2.52e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1822 - - gmx:100777787 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3526 6 40793940 40796912 Sto11g1822 11 16935643 16938631 CCT