Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1821 ATGGGTTTCACTAGAAGGGAAAAGCACATCCGAGCGACTCGGAGGCATCGATCACCCAAAGCTGATACAGATTCCGGTGACAAAACTCCCGTCTCGAAATCTATACTGGAATCTAGCCTCAAGAAGTTCAAAAACCAAATGTTTCTCAACGATTCATCTCGAAATCCAAATTCCAGCTCTGCCTTTAACCCTAGCCGAGAGGGAACCGACTTCCGTTACTGCACCGAAGAACAATTAGAAGCAATTTTATTGAAAACCTTGGAATATCAATACAATGTAGCTCTATCGAAGCTTGTTCAAATGGGCTACGACAAGGACGTTGCTCTCAGAGCAATATTGCAAAATGGACATTGTTATGGTGACAAGGATGTGTTAAACAATATATTGCATAACACATTGGCTTATTTGAATAGTAATGATAGTAGTGCTAGTAATGATGACAATCTGGATGATTCTGAACCTATTTTCTCAGACTTAAGGCAGCTGGTGGAGCAGTCTCTGGTTGCTATGCTCGGTTTGCTTAAACGAATCAAGCCAAATTTGAGTAAAGGCGATGTCCTGCGGTGTTTGGTTATGAATGATCTTCATGTATTACGGGCGAGCTCTGTGGAATCTCCAGTGCTTCCAGTTCAAGGATTTGCTTGCCCTACTCCTAGTACTGCTGAGACTGTTAGTAGGTTTCATGGAGGAGGCTCAGATCTTCCCGTGAGTGGGTTCTCCTCTCACGGTTCCAACCTGACTTTACAAAGGCCTATTGAATTTCCCAAGAGGCTTGATCTTTCTCCTTCAATGAAACTTTTATTGAAAAGAAATGTTGCAACGTTTGCTGCTGGTTTCAGGGAAAATTCAGAACAATTGCAGACACGAGCTATGTCCTGTTCGAGTTTGGATTCTCCACCTGTATCTGAGAATGATGTCTCAGCTGAGCAGTCTGGGGATTCTCAGAATCTGAATAATCAAGATTCTGTGAACTCAATGGTTAGTAAATTTCATGATCTGAATATTGATGAGAGTTTGGAGTTCTTGAAAGGAGATCAGAAAAAGGATGAGGCAAATCAGGCGATAGTCAATATGCTTAATCAAATTAAGGAGCTCGAGAATGAggtaaagaaacaaaaagaatgGGCCCATGAGAAGGCTTTGCAATGTGCAAGGTGGCTAAGTAATGATACGATTGAACTGAAACTTTTGAGGATGGAAAAAGAGGAGACTCAGAGATTGATGAAAGGGAAACATGCAATTGAGGACACAACCTTGAAAAGACTCTCAGAGATGGAGAATGCTTTGAGAAGGACAATTGGCCAAGTGAACCGTGCAAATGCAGCTGTGAGACGACTTGAGGCAGAGAATGCAGAAATCAGAGCAGAGATGGAGGCTTCTAAATTAAGTGCTTCAGAATCAGACACAGCTTGCTCGAACATtgtaaaaagagagaaaaagtacaTGAAGAAGATTCTTGCTTGGGAAAAACTGAAAGCTCAACTACAGCAGGGGACTTctgatgaaaaagagaagatatTGCAGATACAGGAAGAGCTGGTCCGGATTAAAAAGTGTCAGAAAGATGCAGAGGTTAAGAGGAGGGAGGATTTGAAGGCTAAGGAAGAAGCATTTGGCCTAGTTGGGGAGGCTCGACGCTCCAAGGAAGCCGTTGAGGCTGATAATAAGAGGAAGCTTGAGGTGTTGCGGCTCAAGATAGAGATAGATTTCCAGCGCCACAGAGATGATCTCTCAAGACTTGAGCAGGAGCTGTCACGCCTAAGAGCTTCTTCCGAATCGAATACTTCGCCTGCAAGTGAGTCTTCTGAGGGTGCAAAGACCGAAAGAGAGACAATTGCTAAGCTGCTTCAAGAATTAGAAAAGCTGGAGGATTCTTCCAATAAGGAAGTCAGCAGTGACAGGGAATGCGTAATATGCATGAAAGATGAAGTGTCTGTTGTTTTCTTGCCTTGTGCTCACCAAGTTATGTGTGCTAGTTGCAGTGATGCGTATGGGGGAAAGGCTAAAGTTGCTTGTCCTTGCTGCCATGTTCCCATTGAGCAGAGGATCCGCGTATTCGGGGCGAGTTCTACCTGA 2076 0.4249 MGFTRREKHIRATRRHRSPKADTDSGDKTPVSKSILESSLKKFKNQMFLNDSSRNPNSSSAFNPSREGTDFRYCTEEQLEAILLKTLEYQYNVALSKLVQMGYDKDVALRAILQNGHCYGDKDVLNNILHNTLAYLNSNDSSASNDDNLDDSEPIFSDLRQLVEQSLVAMLGLLKRIKPNLSKGDVLRCLVMNDLHVLRASSVESPVLPVQGFACPTPSTAETVSRFHGGGSDLPVSGFSSHGSNLTLQRPIEFPKRLDLSPSMKLLLKRNVATFAAGFRENSEQLQTRAMSCSSLDSPPVSENDVSAEQSGDSQNLNNQDSVNSMVSKFHDLNIDESLEFLKGDQKKDEANQAIVNMLNQIKELENEVKKQKEWAHEKALQCARWLSNDTIELKLLRMEKEETQRLMKGKHAIEDTTLKRLSEMENALRRTIGQVNRANAAVRRLEAENAEIRAEMEASKLSASESDTACSNIVKREKKYMKKILAWEKLKAQLQQGTSDEKEKILQIQEELVRIKKCQKDAEVKRREDLKAKEEAFGLVGEARRSKEAVEADNKRKLEVLRLKIEIDFQRHRDDLSRLEQELSRLRASSESNTSPASESSEGAKTERETIAKLLQELEKLEDSSNKEVSSDRECVICMKDEVSVVFLPCAHQVMCASCSDAYGGKAKVACPCCHVPIEQRIRVFGASST 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1821 691 Coils Coil 563 590 - -
Sto11g1821 691 ProSiteProfiles Zinc finger RING-type profile. 636 676 IPR001841 -
Sto11g1821 691 Coils Coil 605 625 - -
Sto11g1821 691 Pfam Zinc finger, C3HC4 type (RING finger) 633 681 - -
Sto11g1821 691 Pfam Family of unknown function (DUF6592) 87 202 IPR046527 -
Sto11g1821 691 MobiDBLite consensus disorder prediction 290 321 - -
Sto11g1821 691 MobiDBLite consensus disorder prediction 586 608 - -
Sto11g1821 691 SMART ring_2 636 675 IPR001841 -
Sto11g1821 691 Coils Coil 348 375 - -
Sto11g1821 691 MobiDBLite consensus disorder prediction 587 602 - -
Sto11g1821 691 MobiDBLite consensus disorder prediction 1 31 - -
Sto11g1821 691 PANTHER OS05G0141500 PROTEIN 1 689 IPR046934 -
Sto11g1821 691 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 689 - -
Sto11g1821 691 Coils Coil 422 463 - -
Sto11g1821 691 SUPERFAMILY RING/U-box 628 682 - -
Sto11g1821 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 687 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1821 Sto-Chr11 16928928 16931991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1821 600 686 C3H Transcription Factor Family AT1G73950 37.931 1.93e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1821 - - gmx:100777787 813.142