Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto11g1816 | ATGTATCCAGTTGGAGCATCCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACTGCAGTGCCACCtcctgGCACAGAAATGGCTCAGTTGGTTTGTGGAGCATGCCACACCTTGCTCATGTACATCCGAGGAGCCACTAGTGTGCAATGCTCTTGCTGTCACACTGTCAATCTAGCTATGGAAGCAAATCAGGTGGCACATGTCAACTGTGGCAACTGTAGGATGCTACTGATGTACCAATATGGAGCAAGATCTGTGAAATGTGCAGTCTGCAATTTTGTAACATCAGTTGGGGCCTCAGCAAGCACAAATGAGCAGAAATTCAgcgtttaa | 333 | 0.4595 | MYPVGASSVCCAVCNAVTAVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTNEQKFSV | 110 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto11g1816 | 110 | PANTHER | PROTEIN LOL1 | 1 | 107 | - | - | |
Sto11g1816 | 110 | Pfam | LSD1 zinc finger | 1 | 17 | IPR005735 | - | |
Sto11g1816 | 110 | Pfam | LSD1 zinc finger | 32 | 56 | IPR005735 | - | |
Sto11g1816 | 110 | Pfam | LSD1 zinc finger | 70 | 94 | IPR005735 | - | |
Sto11g1816 | 110 | PANTHER | PROTEIN LSD1 | 1 | 107 | IPR040319 | - | |
Sto11g1816 | 110 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 29 | 58 | IPR005735 | - | |
Sto11g1816 | 110 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 67 | 97 | IPR005735 | - | |
Sto11g1816 | 110 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 1 | 20 | IPR005735 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto11g1816 | Sto-Chr11 | 16899829 | 16901343 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-LSD | Sto11g1816 | zf-LSD1 | 1.4e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto11g1816 | - | - | qsu:112000975 | 203.371 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Sto6g3527 | 6 | 40801568 | 40803162 | Sto11g1816 | 11 | 16899829 | 16901343 | CCT |