Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1816 ATGTATCCAGTTGGAGCATCCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACTGCAGTGCCACCtcctgGCACAGAAATGGCTCAGTTGGTTTGTGGAGCATGCCACACCTTGCTCATGTACATCCGAGGAGCCACTAGTGTGCAATGCTCTTGCTGTCACACTGTCAATCTAGCTATGGAAGCAAATCAGGTGGCACATGTCAACTGTGGCAACTGTAGGATGCTACTGATGTACCAATATGGAGCAAGATCTGTGAAATGTGCAGTCTGCAATTTTGTAACATCAGTTGGGGCCTCAGCAAGCACAAATGAGCAGAAATTCAgcgtttaa 333 0.4595 MYPVGASSVCCAVCNAVTAVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTNEQKFSV 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1816 110 PANTHER PROTEIN LOL1 1 107 - -
Sto11g1816 110 Pfam LSD1 zinc finger 1 17 IPR005735 -
Sto11g1816 110 Pfam LSD1 zinc finger 32 56 IPR005735 -
Sto11g1816 110 Pfam LSD1 zinc finger 70 94 IPR005735 -
Sto11g1816 110 PANTHER PROTEIN LSD1 1 107 IPR040319 -
Sto11g1816 110 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 29 58 IPR005735 -
Sto11g1816 110 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 67 97 IPR005735 -
Sto11g1816 110 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 1 20 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1816 Sto-Chr11 16899829 16901343 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Sto11g1816 zf-LSD1 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1816 - - qsu:112000975 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3527 6 40801568 40803162 Sto11g1816 11 16899829 16901343 CCT