Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1812 ATGGATTCACGGGAACCGCCTCAGCCTCCTCCACCGTCGCAGCAGCTACAGTCGATGGCTCAACAACAGCCACAATCGGCTGCGCCCAACATGATGATGGGACACACTTCTTATGCTTCCGTTATGCCCAATCCCAACACATCGTCGATGATCGGCGCTAATTCCAACGCGGCCACCGCGATGATGGCTCCTACCACCGCTCGATTCCCGTTCAACGCTGGGGTCCCGCAGCCCTCTGCTCCGTCTAAGCCTTTGGAGCATCTTAACAACAACAGTAGTCCTTACGATGGTTCGTCGTCCGCGATGAGGCCGTGCGGGTTTAACATTGATGcggcgaagaagaagaggggtAGACCGAGGAAGTATTCGCCTGATGGTAACATTGCTCTGGGTTTGGCTCCAACGCCTATGTCATCCTCCGCTGGTCAGGGTGATTCGAATGGCACGCCATCTACGGATCCTGCGTCGAAGAAACATAGGGGAAGGCCGCCGGGCTCGGGAAAGAAGCAGATGGATGCTCTCGGATCCGCTGGTGTAGGTTTTACTCCGCACGTAATTTTGGTAAAAGCCGGTGAGGACATTGCAGCAAAGATCATGGCCTTCTCTCAGCAAGGGCCTAGGACAGTTTGTATTCTTTCTGCAAATGGTGCTATTGGCAATGTCTCCCTTCGACAGGCAGCAACTTCTGGTGGTACTGTGCAATATGAGGGTCGATTTGAGATTATATCTCTATCAGGTTCTTTCCTGCCATATGATGATAACAGTGGTCGTAGCAGAGCAGGTGGTTTGAGCGTATCTCTTGCAGGGTCTGATGGGAAAGTTTTAGGTGGTGGAGTTGCTGGAATGCTTATTGCTGCATCACCAGTGCAGGTCATTGTGGGTAGCTTTATTGCGGATGGTAAAAAGTCAAGTTCAAACATCCTGAAATCTGGGGCAGCCTCTTCAGGACCAGCCTCCCAAATGTTAAATTTTGGTGGACCTATGACTCCTACCAGCCCTACCTCTCAAGGGCCTTCATCTGAGTCCTCTGATGACAATGACAATAATAGTGCTTTCAATAGGGGGCCTGGACTCTACAATAATGCTAGTCAGCCCATTCATAATATGCAGATGTATCATCCTCAGCTATGGGCTGGTCAATCTCAGCCATGA 1152 0.5009 MDSREPPQPPPPSQQLQSMAQQQPQSAAPNMMMGHTSYASVMPNPNTSSMIGANSNAATAMMAPTTARFPFNAGVPQPSAPSKPLEHLNNNSSPYDGSSSAMRPCGFNIDAAKKKRGRPRKYSPDGNIALGLAPTPMSSSAGQGDSNGTPSTDPASKKHRGRPPGSGKKQMDALGSAGVGFTPHVILVKAGEDIAAKIMAFSQQGPRTVCILSANGAIGNVSLRQAATSGGTVQYEGRFEIISLSGSFLPYDDNSGRSRAGGLSVSLAGSDGKVLGGGVAGMLIAASPVQVIVGSFIADGKKSSSNILKSGAASSGPASQMLNFGGPMTPTSPTSQGPSSESSDDNDNNSAFNRGPGLYNNASQPIHNMQMYHPQLWAGQSQP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1812 383 SUPERFAMILY AF0104/ALDC/Ptd012-like 181 297 - -
Sto11g1812 383 ProSiteProfiles PPC domain profile profile. 177 318 IPR005175 -
Sto11g1812 383 MobiDBLite consensus disorder prediction 308 365 - -
Sto11g1812 383 MobiDBLite consensus disorder prediction 83 99 - -
Sto11g1812 383 MobiDBLite consensus disorder prediction 15 41 - -
Sto11g1812 383 CDD DUF296 182 296 IPR005175 -
Sto11g1812 383 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 92 377 IPR039605 GO:0003680
Sto11g1812 383 MobiDBLite consensus disorder prediction 72 175 - -
Sto11g1812 383 Gene3D - 183 308 - -
Sto11g1812 383 SMART AT_hook_2 113 125 IPR017956 GO:0003677
Sto11g1812 383 SMART AT_hook_2 157 169 IPR017956 GO:0003677
Sto11g1812 383 Pfam Plants and Prokaryotes Conserved (PCC) domain 183 296 IPR005175 -
Sto11g1812 383 MobiDBLite consensus disorder prediction 1 41 - -
Sto11g1812 383 PANTHER PPC DOMAIN-CONTAINING PROTEIN-RELATED 92 377 - -
Sto11g1812 383 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1812 Sto-Chr11 16869413 16873963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1812 29 381 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 44.499 9.04e-83 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1812 - - zju:107430497 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3531 6 40822695 40827070 Sto11g1812 11 16869413 16873963 CCT