Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1803 ATGTCTCAAATCCAATCGGGAGATATGAATTACTGTGAAAAGAAAGGCAGCGAAGGAGGCGTGAAGAGGGGTATCCCACAAGTTCGTGACCACATCATGGCTGAGAGAAAACGCAGAGAAAAGCTAAGCCAGAGCTTCATTGCTCTCTCTGCCCTTCTCCCTGGCCTCAAGAAGATGGATAAGGCTTCGGTGCTTGGGGATGCAATAAAGTACGTGAAAGAGATGAAGGAAAAATTGACAATGCTGGAAgaacagaacaagaagaggagaGTAATGGAATCGGTAGTGACGGTGAAGAAATCGCCAATATGTGGAGGAGACGATGATTCGTCGTCGAGTGAAGAGAACGTAATAAACGGCGTCGGTGAAGCAGAATCGTTGCCGGAAGTGGAAGTAAGAGTGTCCGACAAGGACGTACTCCTACGGATCCACTGTCAGAAacataagggtattttggtcaaaatattaGCCGAGATTCAAAACCTTGATCTATTTGTCGTCAATAGCAGCGTTTTGCCATTTGGAGATTCTAATATAGATGTAACCATTATTGCTCAGATGGGGGAAGGTTACAACTTGAGAATGAAGGATCTGGAAGCAGCAGGAGATTGCAGTTTCAGTTTGGAGGAAGAGAATAAGTTTGATAGTAATTTGTGTAgagatcataataataataatgatagctACGGATCCTTTTGTATTTCGAGCTTTAATAATCCTACATGTCAAGTACCAGTAGTAGATGATATGGTAAAGGAGGAGGCAGATTTGGGTTCAAAGCAGAGTGAAAGTAGAATTAATAGTAAAGCAAGAGAGAGGCAGAGAGGAGAAGGCAATGATCACATAATTGCAGAGAGAATGAGGAGAAAGAAGATTACGCAGCACTTCATAGCTCTTTCAGCCCTTATTCCTGGCCTCAAAAAGGTGGACAAGGCGACAGTGCTGGAGGAAGCTATCAAATATGTGAAAGAGTTGGAAGAGCAAGTGAAAGTGCTGGAAGAAAAAAGCAAAAAGGAGAGCGTAGAACTAGAGGTAAAGGATGAGTTCAGCTTGAGCGCCAAGGAGATCGCTACAAAACTCAGACTCGCACTTTTCAATTAA 1101 0.4078 MSQIQSGDMNYCEKKGSEGGVKRGIPQVRDHIMAERKRREKLSQSFIALSALLPGLKKMDKASVLGDAIKYVKEMKEKLTMLEEQNKKRRVMESVVTVKKSPICGGDDDSSSSEENVINGVGEAESLPEVEVRVSDKDVLLRIHCQKHKGILVKILAEIQNLDLFVVNSSVLPFGDSNIDVTIIAQMGEGYNLRMKDLEAAGDCSFSLEEENKFDSNLCRDHNNNNDSYGSFCISSFNNPTCQVPVVDDMVKEEADLGSKQSESRINSKARERQRGEGNDHIIAERMRRKKITQHFIALSALIPGLKKVDKATVLEEAIKYVKELEEQVKVLEEKSKKESVELEVKDEFSLSAKEIATKLRLALFN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1803 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 75 IPR011598 GO:0046983
Sto11g1803 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 337 IPR036638 GO:0046983
Sto11g1803 366 Coils Coil 72 92 - -
Sto11g1803 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 325 IPR011598 GO:0046983
Sto11g1803 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 90 IPR036638 GO:0046983
Sto11g1803 366 Coils Coil 315 342 - -
Sto11g1803 366 Gene3D - 271 348 IPR036638 GO:0046983
Sto11g1803 366 Gene3D - 27 98 IPR036638 GO:0046983
Sto11g1803 366 MobiDBLite consensus disorder prediction 1 23 - -
Sto11g1803 366 PANTHER BHLH TRANSCRIPTION FACTOR 14 198 - -
Sto11g1803 366 PANTHER BHLH TRANSCRIPTION FACTOR 223 342 - -
Sto11g1803 366 MobiDBLite consensus disorder prediction 256 278 - -
Sto11g1803 366 SMART finulus 282 331 IPR011598 GO:0046983
Sto11g1803 366 SMART finulus 32 81 IPR011598 GO:0046983
Sto11g1803 366 Pfam Helix-loop-helix DNA-binding domain 281 326 IPR011598 GO:0046983
Sto11g1803 366 Pfam Helix-loop-helix DNA-binding domain 30 75 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1803 Sto-Chr11 16759171 16774265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1803 252 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.485 3.87e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto11g1803 HLH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1803 - - gmx:100788128 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3542 6 40904933 40909941 Sto11g1803 11 16759171 16774265 CCT