LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto11g1798	ATGAAGCTTCTCCTTATTATCAACCATTTGTCAGTTTTACTACTGTGCTTCAGTCATTTCTCGCAGGAGGTGTCTCTCCTCGGTGATTCCCAAATTCTTCTACGGGTAAAGAATACCCAACTCCTAGATAACAATGGGAGTCTCGAGAATTGGGTTCCCAACACAGATCATAATCCCTGTAATTGGACTGGCATTACCTGTGAAGTGGGAAATCGCTCAGTTGTTTCTATTGACCTCTCCGGGACTGGCATTTACGGTGGATTTCCCTTCGGTTTTTGTCGTATTCCGTCCCTGCGAAGTCTTTCTCTGGCGCAAAATTATCTCGGTGGTGCTATCTCTCCCGAATCGCTCCTCCCCTGCTCTCACCTTCGTCTATTGAATCTCTCCGATAACTGCTTCGTCGGCGAGTTGCCGGAATTCTTGTCCGACTTCTCTGAACTGAGACAACTCGATTTCTCGCGCAACAACTTCTCCGGTGATATTCCGGCGAGTTTTGCTCGGTTTCCACATCTGAGTGCCCTCGTGTTATCCTCAAACTTGCTCAACGGAACGATTCCTCCGTTCTTAGGGAATCTCAGTGAGTTAACTCGTTTGGAGCTCGCGTATAATCCTTTCAGGGCAGGACCTTTGCCTTCGCAACTAGGAAATTTATCGAAGCTCCAAGTTATGTTCCTAACGCAAGTAAATGTGGTAGGGAGTATACCGGATTCGATAGGGAAGCTGGTCTCGCTCAAGAACTTGGATTTGTCTGCTAATTCCTTGTCAGGTAAAATTCCAGATAGCATTTCGGGTTTGAGCAATGTAGAGCAAATTCTTCTATTTCTAAACAATCTATCTGGTGAAATTCCTCGAGGTTTAGGAAATCTTAGTAGTTTGACTAGCTTAGACCTCTCTCAGAACAGTCTCACTGGAAAATTTCCGGATTCAGTGGCTGCATTGCATCTTCAGTCTCTCGCATTGAACGATAATTTCCTCGAAGGGGAAATCCCTGCAATTCTAGCTTCAAATCCGAATTTACAGAGTCTGAATCTCTTTAATAACAGCTTTACTGGGAAATTGCCAGAGGATCTCGGGCGAAACTCTGATTTGGAGGAACTTGATGTTTCTACGAATGACTTTAACGGCGAATTGCCTAAGTACCTCTGTGAAAGGAACAAGTTGAACCGTCTCATCACATTCACGAATCGCTTCACGGGAAGTTTACCAGAGCAGTACGGTGACTGTCATTCGCTCTATTATGTCAGAATCAAGAACAACGAGCTTTCAGGCGATGTGCCCTCAAAATTCTGGAAACTTCCTGGCCTTCAATTTCTTGAAATGGATAACAATAGGTTTGAAGGTTCAGTCTCCATCTCTGGCTCTCATGGACTAACCGATCTTATTATATCAGGTAACAGGTTTTCTGGACAATTCTCCACGGAAATTTGTGAACTCCATAGTCTTACGAACATTGACATGAGCCGAAACCGGTTTACCGGTGAAGTTCCGTCGTGTATAACCGGATTGAAAAAGTTACAAAAGCTGAGATTGCAGGAGAACATGTTCACCGGCAAGATTCCCAGTAAAGTGAATTCCTGGACTGATTTGACCCTGTTCAACTTGTCGTATAACAGATTCTCGGGTACGATTCCGCCACAACTTGGTAATTTGCCAGACTTGACTTATCTTGATCTCGCCGTGAATTCCCTGACGGGGAAAATTCCGCCGGAGTTGGCGAAACTCAAGCTCAGCGTCTTCAACGTGTCAGGGAACAAACTCTCCGGGAAGGTACCTTCTGGTTTCAACAACGACGTCTATTTGTCAGGTCTCGCCGGTAATCCCGATCTCTGTAGTTCATCCATGAAACCTCTCCCTCCTTGTACGAAATCAAATCCGTTTTCTTCGATTGCTATAATTATTCTCTCCACCTGCGTTATTCTCCTTCTGGGCTCTCTGCTCTGGTTCCTAAAGCGGAGTTCGATCTTCACAAGTGCCAAATCCCATCCCTCCTGGACGACAACCACATTCCAAAGGGTGAGCTTCAAGGAAGAAGACGTAGTCCCATTGTTAACCACCGAGAATCTCATCGGCACAGGAAGCTCTGGCCGCGTCTACAAAGTGAAGCTCAAAACAGGGGAGACAGTCGCCGTCAAGAAACTCTGGGATGAAGCCACAGAAAAACCAGACGCAGAATCGGTGTTCAAGTCAGAGATAGAGACACTGGGTCGAATCCGCCATGTTAATATAGTGAAACTGCTATATAGTTGCAGCGCCGACGATTTCCGTATACTGGTGTACGAGTACATGGAGAATCACAGCTTAGGTGACGCCTTGCACGGCGAAAAGTGCGGTGAGTTAATGGATTGGTCTAGACGTTTCACCATAGCAGTGGGTGCAGCTCAAGGGTTGGCTTATTTACATCACGATTGTGTGCCTCCCATCATTCACAGGGACGTGAAGAGTAATAACATATTGCTGGACCAAGAGTTCAGACCTCGTGTTGCAGATTTTGGGTTGGCTAAGACCTTGAAGCGTGATGTGAACCAGGGTGGTGCTATGTCCAGAGTCGCTGGTTCCTATGGTTACATTGCTCCAGTGACTGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTGCTGATGGAATTGATCACAGGGAAGAGGCCGAATGATGTGTGTTTTGGTGAGAATAGGGATATAGTGAAGTGGATAACTGAGACTGCTTTATTCTCTCCTCAAGAAGCTCATAGAAGTGCAGTTTTGGCTCGGATTGTAGACACTAGAATGAATCCGTCCACATGTGATTATGATGAGATTGATAAGGTTTTGAATGTGGCTCTGCTTTGCACCTCTGCGTTTCCCATTAATAGACCCTCTATGAGAAGGGTGGTGGATTTGCTCAAGGAACACAAGCCTCTTCATCTACCTAATTCATGA	2913	0.4569	MKLLLIINHLSVLLLCFSHFSQEVSLLGDSQILLRVKNTQLLDNNGSLENWVPNTDHNPCNWTGITCEVGNRSVVSIDLSGTGIYGGFPFGFCRIPSLRSLSLAQNYLGGAISPESLLPCSHLRLLNLSDNCFVGELPEFLSDFSELRQLDFSRNNFSGDIPASFARFPHLSALVLSSNLLNGTIPPFLGNLSELTRLELAYNPFRAGPLPSQLGNLSKLQVMFLTQVNVVGSIPDSIGKLVSLKNLDLSANSLSGKIPDSISGLSNVEQILLFLNNLSGEIPRGLGNLSSLTSLDLSQNSLTGKFPDSVAALHLQSLALNDNFLEGEIPAILASNPNLQSLNLFNNSFTGKLPEDLGRNSDLEELDVSTNDFNGELPKYLCERNKLNRLITFTNRFTGSLPEQYGDCHSLYYVRIKNNELSGDVPSKFWKLPGLQFLEMDNNRFEGSVSISGSHGLTDLIISGNRFSGQFSTEICELHSLTNIDMSRNRFTGEVPSCITGLKKLQKLRLQENMFTGKIPSKVNSWTDLTLFNLSYNRFSGTIPPQLGNLPDLTYLDLAVNSLTGKIPPELAKLKLSVFNVSGNKLSGKVPSGFNNDVYLSGLAGNPDLCSSSMKPLPPCTKSNPFSSIAIIILSTCVILLLGSLLWFLKRSSIFTSAKSHPSWTTTTFQRVSFKEEDVVPLLTTENLIGTGSSGRVYKVKLKTGETVAVKKLWDEATEKPDAESVFKSEIETLGRIRHVNIVKLLYSCSADDFRILVYEYMENHSLGDALHGEKCGELMDWSRRFTIAVGAAQGLAYLHHDCVPPIIHRDVKSNNILLDQEFRPRVADFGLAKTLKRDVNQGGAMSRVAGSYGYIAPVTEKSDVYSFGVVLMELITGKRPNDVCFGENRDIVKWITETALFSPQEAHRSAVLARIVDTRMNPSTCDYDEIDKVLNVALLCTSAFPINRPSMRRVVDLLKEHKPLHLPNS	970

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto11g1798	970	Pfam	Protein kinase domain	685	883	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto11g1798	970	Gene3D	Transferase(Phosphotransferase) domain 1	762	966	-	-
	Sto11g1798	970	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	13	964	-	-
	Sto11g1798	970	SUPERFAMILY	L domain-like	313	621	-	-
	Sto11g1798	970	ProSiteProfiles	Protein kinase domain profile.	683	965	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto11g1798	970	SUPERFAMILY	RNI-like	70	391	-	-
	Sto11g1798	970	Gene3D	Ribonuclease Inhibitor	312	626	IPR032675	-
	Sto11g1798	970	ProSitePatterns	Protein kinases ATP-binding region signature.	689	712	IPR017441	GO:0005524
	Sto11g1798	970	Gene3D	Ribonuclease Inhibitor	28	311	IPR032675	-
	Sto11g1798	970	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2	13	964	-	-
	Sto11g1798	970	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	807	819	IPR008271	GO:0004672\|GO:0006468
	Sto11g1798	970	Gene3D	Phosphorylase Kinase; domain 1	656	761	-	-
	Sto11g1798	970	PRINTS	Leucine-rich repeat signature	244	257	-	-
	Sto11g1798	970	PRINTS	Leucine-rich repeat signature	289	302	-	-
	Sto11g1798	970	Pfam	Leucine Rich Repeat	243	265	IPR001611	GO:0005515
	Sto11g1798	970	Pfam	Leucine Rich Repeat	291	311	IPR001611	GO:0005515
	Sto11g1798	970	Pfam	Leucine rich repeat N-terminal domain	29	67	IPR013210	-
	Sto11g1798	970	SMART	serkin_6	683	965	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto11g1798	970	SUPERFAMILY	Protein kinase-like (PK-like)	682	959	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto11g1798	Sto-Chr11	16699015	16702051	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto11g1798	23	966	Receptor kinase-like Gene Family	AT5G65710	54.312	0.0	1026

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Sto11g1798		Pkinase	4.3e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto11g1798	-		-	gmx:100813889	1364.75