Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1789 ATGGGTCTTCCCGATTCTGCTACCTCGCACTCCGACCTTCACCTCGTTCTAGGGTTAGCTCTGCGTGGTGCTGCAGAGGCAGACGACAGCGAAACCGCCGCTAAGAAAGGCTCCTCCAATTTCATGGTATCCAGTGGCGGCGGTGAGCCGTCTTTGACGTTGGCTCTCTCCGGCGGCGGAGACAGTAGTACTTGGCAGGTGGCTAAAAACATTGATGTGAACAAAGTGTGTGAGGACTACTACTTGACTTCTTCGCCTCACAGTGGTGTTTCGTGCTTCTCCAGTGGGAGTGGGAGGGTGAAGAGGGAGAGAGATCTGAGCAGCGAAGATCTGGCTGAGCCCGAGGCTGTGGATAGAGTTATTTCTTCCAGCAGAGCCAGCGATGAAGACGAAGACGCCACTAATTCCAGAAAGAAGCTCCGGCTCACCAAAGAACAATCCGCTCTCCTCGAGGAAAGCTTCAAGCAACACAGCACTCTCAACcctAAGCAAAAGCAAGCCTTAGCCAGGCAGTTGAATCTACGGCCTCGCCAAGTTGAAGTGTGGTTCCAGAATCGGCGAGCCAGGACAAAGCTAAAGCAAACGGAGGTGGACTGCGAGTTCTTAAAGAAATGTTGCGAAACGCTGACGGATGAGAACAGGAGGCTACAGAAGGAGGTGCAAGAGCTGAAGGCGCTGAAGCTGGCTCAGCCTCTGTACATGCCGATGCCGGCGGCTACTCTCACCATGTGCCCCTCCTGTGAGAGGCTGGGTGGTGTGAGCGTGAGCGACGCCGCTTCGAATAAGACCCCATTGATCTCAATGGCTCCTAAGCCTCCTCATCACTTGTACAACCCCTTCACCAATCCTTCCGCAGCATGTTGA 864 0.5405 MGLPDSATSHSDLHLVLGLALRGAAEADDSETAAKKGSSNFMVSSGGGEPSLTLALSGGGDSSTWQVAKNIDVNKVCEDYYLTSSPHSGVSCFSSGSGRVKRERDLSSEDLAEPEAVDRVISSSRASDEDEDATNSRKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSVSDAASNKTPLISMAPKPPHHLYNPFTNPSAAC 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1789 287 Pfam Homeobox associated leucine zipper 193 227 IPR003106 GO:0006355|GO:0043565
Sto11g1789 287 PANTHER - 15 287 - -
Sto11g1789 287 Pfam Homeodomain 137 191 IPR001356 GO:0003677
Sto11g1789 287 Coils Coil 199 229 - -
Sto11g1789 287 Gene3D - 141 191 - -
Sto11g1789 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 15 287 - -
Sto11g1789 287 CDD homeodomain 137 194 IPR001356 GO:0003677
Sto11g1789 287 SMART halz 193 236 IPR003106 GO:0006355|GO:0043565
Sto11g1789 287 SUPERFAMILY Homeodomain-like 123 194 IPR009057 -
Sto11g1789 287 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677
Sto11g1789 287 MobiDBLite consensus disorder prediction 104 141 - -
Sto11g1789 287 SMART HOX_1 135 197 IPR001356 GO:0003677
Sto11g1789 287 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1789 Sto-Chr11 16645165 16646243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1789 1 287 Homeobox Transcription Factor Family AT4G37790 55.892 1.68e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto11g1789 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1789 K09338 - gmx:100795135 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3554 6 40964544 40969116 Sto11g1789 11 16645165 16646243 CCT