Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1755 ATGGGTGCTCCTAAGCAGAAATGGACCGCTGAAGAAGAAGCAGCACTAAAAGCTGGAGTAGTCAAACATGGAGCAGGAAAATGGCGCACTATACTTATGGACCCAGAGTTCAGTTCCATTCTGTGCATGCGTTCAAATGTAGATCTAAAGGATAAATGGAGGAATATAAATGTGACAGCAATTTGGGGATCCAGGCAGAAGGCAAAGCTTGCACTTAGAAGGAGCCTTCCAGCCCCTAAAAATGATAATAACCATCTTGCCTTGAGCACCATAGTTCACTGTGATGAAGTTCCTGATACTAAGCCTCATGCATTTTCTGGAGGAACATTGCAATCTGCTAATTCAAAACGACAAATATCAAGGTTGGATAATCTTATATTGGATGCTATTATCCATCTGAAGGAGCCAAAGGGTTCTGACAGGGCTTCCATTGCTACATACATAGAGTTCTGCTGCTTTGTTTTCTGTTTTGTGAAGATAAAATCTGCTGCTGTGGACCAATACTGCTCTCCACCAAACCTCAGAAAGATATTGTCAACAAAACTGAAGCATATGGTGGCAAGTGGCAAATTAATGAAGGTGAAGCATAGGTACAGGATTACACCAAGTTCAACGCTCTCTGAGAAAAGAAGATGCTCTTCCTTGTTACTGCTTGAAGGTAGGCCCAAGGATTCTTCAAAAGCAGAGATGAACGATGTCGACATCCTTTCAAAATCCAAAATTGACGCCGAGCTATCAAAAGTGAAGGGCATGACAGCGCAAGAGGCAGCAGCTGCTGCTGCTAAAGCTGTTGCAGAGGCAGAAGCTGCCATTGCAGAGGCTGAGGCTGCAGCTAGGGAGGCAGAGGTTGCAGAAGCTGAAGCCGAGGCTGCACAAGTGTTTGCAAAAGCAGCAATGAAGGCACTAAAGTGCAAATCGCTTCATATCTGGCCTATTCACTGTGGCAAAATCACCACCATCCCCATCAACATGATTATCATGGAACGAAATCGCATCTGGTTTGACATGAACACTAGAAACAAGTTCAGTCCACTGCTTTTCACTTACTTGAAACGGTGCATAAGCCATGGTGTTGATAAGCACAACAGCCCTTTCATAATTATGTTGAGCTGTAGCTTGAATTATCAATTCCATAAAGAAGACAGGATGAGGAATTTCTTCAGATTCCAGAATAACGTCAAATGCATGCTCCAGCAAATGCCACTGCAATGA 1212 0.4356 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILCMRSNVDLKDKWRNINVTAIWGSRQKAKLALRRSLPAPKNDNNHLALSTIVHCDEVPDTKPHAFSGGTLQSANSKRQISRLDNLILDAIIHLKEPKGSDRASIATYIEFCCFVFCFVKIKSAAVDQYCSPPNLRKILSTKLKHMVASGKLMKVKHRYRITPSSTLSEKRRCSSLLLLEGRPKDSSKAEMNDVDILSKSKIDAELSKVKGMTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEVAEAEAEAAQVFAKAAMKALKCKSLHIWPIHCGKITTIPINMIIMERNRIWFDMNTRNKFSPLLFTYLKRCISHGVDKHNSPFIIMLSCSLNYQFHKEDRMRNFFRFQNNVKCMLQQMPLQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1755 403 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 202 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto11g1755 403 SMART h15plus2 116 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto11g1755 403 Gene3D - 2 59 - -
Sto11g1755 403 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Sto11g1755 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Sto11g1755 403 PANTHER SINGLE MYB HISTONE 4 1 309 IPR044597 GO:0003691
Sto11g1755 403 CDD SANT_TRF 6 57 - -
Sto11g1755 403 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sto11g1755 403 PANTHER MYB TRANSCRIPTION FACTOR 1 309 - -
Sto11g1755 403 Coils Coil 257 291 - -
Sto11g1755 403 SMART sant 4 59 IPR001005 -
Sto11g1755 403 Gene3D - 115 213 IPR036388 -
Sto11g1755 403 SUPERFAMILY Homeodomain-like 2 63 IPR009057 -
Sto11g1755 403 SUPERFAMILY "Winged helix" DNA-binding domain 116 211 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1755 Sto-Chr11 16372064 16378388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1755 1 310 Single Myb Histone (SMH) Gene Family AT5G67580 53.651 4.69e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto11g1755 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1755 K09422 - gmx:100779583 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3586 6 41169914 41173249 Sto11g1755 11 16372064 16378388 CCT