LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto11g1682	ATGGAACCAGCTTCTGCGGACTCATCTTCTCAACCTACCAACTCGTCTCCTAATGTTAAACATCATTCTCCCAACATCTCTAGACAAAATGACAATGCGCATGACTCTGCATCCTCGTCTGCTTCTGACAAATCATCCTGGGTGAGGAATCTGAATTTATCACAGTCCTTTGGAGCAAGACGAGAGAACTTTCAGAGTGGAGATGCTGGGATGTCAAATTTGTCTCGATTGACTAGTGGGCTTGGATTGCGAATGCTCTCAATGCCTTCTGCACGGAATGAGACTACTCCAGTCAATCCAGGGGATGAGAAACCTAGTTTAATCGAATCATTCACCAAAGGGTTAGTTGACTCATCTAAGACTGCAGTAAAGAAGATGCAGGTCACTGCACGTCATATTGTCTCTCAAAACAAACGTAGATACCAGGATGACGAGTTTGATTTGGATTTGGCGTACATTACTGAAAACATAATTGCTATGGGATTTCCAGCTGGTGATTCCAGCTCTGGAGTTTTCGGATATTTTGAGGGTTTCTATCGCAATCACATGGAAGAAGTGATTAGATTTCTCGAGACTCATCATGAGGGAAAGTACAAAGTATATAATCTGTGTTCAGAGAGGCTGTACGATGCATCACTGTTCAAGGGGAAGGCTGCAAGTTTCCCATTTGATGATCATAATTGTCCCCCCATCGAACTTATAGCATCATTTTGTAGAAGTGCATATTCATGGCTGAAGGAGGATATTCAAAATGTGGTAGTTGTTCATTGTAAAGCTGGTATGGGGAGGACAGGAGTGATGATTTGTAGCCTTCTTTTGTATCTTAAGTTCTTTCCAACTGCTGAGGAAGCCATTAATTGCTTTAATGAGAAAAGATGCATTGATGGGAAGGCCCTAGTTCTGCCTAGTCAGATTAGGTATGTCAAATACTTTGAACGGACTTTAACATACTTCAAAGGAGAAGTTCAGCCTGGACGAAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAATGCCCATATTGGGTTAGGCCATCCATCACAATTTCTGATCATAATGGAATTCTTTTCACCACAAAAAAGCATCCAAAAACAAAGGATCTAATGCCAGAAGATTTTTGGATTAGCGCACCAAGGAAAGGAATTGTGGTCTTTGCATTACCAGGGGAGCCTGGTCTGACAGAATTAGTTGGGGacttcaaaatttattttcatgatCGACAAGGAGATTTCTACTGTTGGTTAAATACAACAATGacagaaaacagaaaaatttTAGATGCCTCGGAGCTTGATGGTTTTGACAAGAGAAAAATCCCAGCTCCAGGATTTCAGGTCGAAGTAGTGATGATAGACTATAATGGCACCCTACCTACAAGGACAAAAGCCAATCCTTCCAACCAAGGATCTAGTGGTAGCACAGGCAATAATGTCCCAGTATCAGATGTGAGGCTTGCTTCTATTTCAAGTGAGAATAAGGTCCCTACAAATGGAGATGATGATGTATTCTCAGATAGTGAAGGAGAGGAAACCCATGATTCAGAGAGAAGGAAAGCTAAAGCTGCATCTGAACCTATTTCTGGGGAACATCATAAAGTATCTGATCCCACTACAGACCAAATTGGGGTCTTAACGCATGGAACAAATCAGCTTTCACTCCAGCAAGAGAGGCATGCAAAAGATAATGCTTCTGAAGAAGCAAGTACTCCCAACGTTCAGAAAAGCCCCAAGGCAAGTAAAAGGGAATATGCTGGTGGAGCAACTGATATTAAGGCCATAGCTGCTGATGCTTCAGTTTTTTCTTTTGGAGATGAAGATGATTTTGAAAGTGACTGA	1833	0.413	MEPASADSSSQPTNSSPNVKHHSPNISRQNDNAHDSASSSASDKSSWVRNLNLSQSFGARRENFQSGDAGMSNLSRLTSGLGLRMLSMPSARNETTPVNPGDEKPSLIESFTKGLVDSSKTAVKKMQVTARHIVSQNKRRYQDDEFDLDLAYITENIIAMGFPAGDSSSGVFGYFEGFYRNHMEEVIRFLETHHEGKYKVYNLCSERLYDASLFKGKAASFPFDDHNCPPIELIASFCRSAYSWLKEDIQNVVVVHCKAGMGRTGVMICSLLLYLKFFPTAEEAINCFNEKRCIDGKALVLPSQIRYVKYFERTLTYFKGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHNGILFTTKKHPKTKDLMPEDFWISAPRKGIVVFALPGEPGLTELVGDFKIYFHDRQGDFYCWLNTTMTENRKILDASELDGFDKRKIPAPGFQVEVVMIDYNGTLPTRTKANPSNQGSSGSTGNNVPVSDVRLASISSENKVPTNGDDDVFSDSEGEETHDSERRKAKAASEPISGEHHKVSDPTTDQIGVLTHGTNQLSLQQERHAKDNASEEASTPNVQKSPKASKREYAGGATDIKAIAADASVFSFGDEDDFESD	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto11g1682	610	PANTHER	PHOSPHATASE WITH HOMOLOGY TO TENSIN	10	610	-	-
	Sto11g1682	610	MobiDBLite	consensus disorder prediction	508	535	-	-
	Sto11g1682	610	ProSiteProfiles	Phosphatase tensin-type domain profile.	139	318	IPR029023	-
	Sto11g1682	610	MobiDBLite	consensus disorder prediction	458	582	-	-
	Sto11g1682	610	CDD	PTP_PTEN	149	313	IPR045101	GO:0016791
	Sto11g1682	610	MobiDBLite	consensus disorder prediction	1	47	-	-
	Sto11g1682	610	SMART	PTEN_C2_2	323	451	IPR014020	-
	Sto11g1682	610	Pfam	Protein-tyrosine phosphatase	225	277	IPR000242	GO:0004725\|GO:0006470
	Sto11g1682	610	PANTHER	PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B	10	610	-	-
	Sto11g1682	610	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	152	319	IPR029021	-
	Sto11g1682	610	MobiDBLite	consensus disorder prediction	537	556	-	-
	Sto11g1682	610	ProSiteProfiles	C2 tensin-type domain profile.	325	452	IPR014020	-
	Sto11g1682	610	Gene3D	Protein tyrosine phosphatase superfamily	124	321	IPR029021	-
	Sto11g1682	610	ProSitePatterns	Tyrosine specific protein phosphatases active site.	255	265	IPR016130	GO:0016311\|GO:0016791
	Sto11g1682	610	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	253	292	IPR000387	GO:0016311\|GO:0016791
	Sto11g1682	610	MobiDBLite	consensus disorder prediction	458	498	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto11g1682	Sto-Chr11	15696227	15701878	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto11g1682	40	610	Protein tyrosine phosphatase (PTP) family	AT3G19420	61.986	0.0	729

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto11g1682	K01110		-	gmx:100807702	831.632