Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1666 ATGGCGAATCATCAAGGAGGAATGGGTGATCTGGATTTGAACTCTTATCCAAACAACAACGAAAACGAGGTCAATCCTCATTCGGGTGGCGCATTAGGAGGATTTCTTCCTCTTGGGATTTCTCCTAATGGAGGTGATCAAAGGTTCCCAAATTGGGTTTCAGGGTCAAATCATCTCCCAAATGTTGCTCATGAATCATCTCAAGAACTGGGGCTTTCTTATTTAACTCCCCATACTGGAAATGTTCCAAGCTTTCCAAATAGTGTTTCTGGATCAAATCTTGTGCATTATCAACCGAGTCATACTCTTTTTCCGAGTAATGATGGCCGTGCTGGTGTTTTTCCTCGTAATATAGACTTGAATGCAGAATTTGCCGGGAACAACCATTACAATAGTCCCAATGTGCCATTAGGTAGCTTTTGCCTTCATCCAAATGGACTGGAAAATCATAATGGCAACAACTCTGCTAGAGCTGTGATTGACAGTGGAGTATCAAGGTATGTAATGCAAGAGCCAAGTATGGAAGGGAGCTCACAGGATGCGAGGTGTTTGTACGGGAAGAGAAGCTGTCCCGAGCATAGTTTCCGAGAAATGTTAGTTGGGGAGAGTTCTAGCATGGGTGCACAAGCTGGAAATTACAAACGCCGCCTTTATGAACTCAATTCCAATACCAGCCTAAACATGCCTATTCCTTGTACTGGTCCTGTTTGTCATCCTCAACACTATGAGACTGGAATGGGTCATGGTACTACTATGAGGCCATTTTCTGGCATTCAAAACTTGAATGAATCTCCACAAATCCATAGCTTCCATAATCAAGAAGCTTCTCTGCATCCTGGCTTATGCAACCATCTTCCTTTCTCCAGGTCTCCACAAAGTTCAGTTGGTGCACTTTCCTCACTGCACGTAATTGAGGATGTTCCTAATTTCCATCAAACACCACAGGATACCCCCTCTTTTGAGATTATGAGCTCAACAAGTCTTAATCCTCCTTTTTTGCCTGTCTTTACTGGAATGGAAAGTGCGACTGTGGGATCTTTCCTTTGGCCAGGAAGCGTAGCTGGAAACAGCATGCTTCCCCATGAAATTGCAATGGGAGATTGGGAACATATTGCAGCAAACTTGGGTTTTCCCATTGGGGGCTCTACTCATCCTTCTCAGAACAGTTCTGGAGGTTTTGATTTAACAAGTCCTCTTGCTTGGGCCCCAGGGTCCAACTTTCTTCAAAATATGCGGATACCATTGGCAATTATCAATCATCCTGTACTTTCAGCaatgaatttggaaatccaaagTAACAACAGGCCTTCGGATTCAGATTCAAACTCTTCAGAAATGTCACAGGGATCTGAGTTGTCTTTTGGAACAGGTAATGTTGTGCTTGTATCTCAGAATCAGGGTGCATCAGAAGAAACATCTGAGAATCATGCTGCTAATGCAGGGAATCAAGGTGGCTCTATTTCTATATGGGCACCTggtaataatgaaaatagaacGAGGCTGATGGCTGGGCTTCGCAGCACCTTGCAACATCTGCGCAGTGGAGGCAACTTGCGCCCTCAGGATTTTCTGATGCTTGACCATTCAATCATATTACATTTACTTGGGGAGATTACTGGTAGTAGTGGCGTGGAGCTTgatttggagaacttggcatatgAGGATCTGATTGCGCTTGAAGAGCATATGGGAATTGTGGACCATGGATTAACTGAGGAAGAGATTGAGAGCCACCTTAGGCAGGAAAAATTCCAGCTCATCTCACAAGGTTCTACTGAGGAAATTGAATCCTGCTGCATCTGTCAGGAGGATTACAATGAAAATGAAGATCTGGGTATGCTGGACTGCAACCATAGGTTTCATGCAGAGTGCATCAAGGAATGGCTGGTGAGGAAGAACAACTGCCCTATCTGCAAGCAAACTGCACTAGCTGCTGCTGGAGAAGAAGCAGGTGAAGAGGCaggtgaagaggaagaagatggcgGTGATGCTTGA 1995 0.4281 MANHQGGMGDLDLNSYPNNNENEVNPHSGGALGGFLPLGISPNGGDQRFPNWVSGSNHLPNVAHESSQELGLSYLTPHTGNVPSFPNSVSGSNLVHYQPSHTLFPSNDGRAGVFPRNIDLNAEFAGNNHYNSPNVPLGSFCLHPNGLENHNGNNSARAVIDSGVSRYVMQEPSMEGSSQDARCLYGKRSCPEHSFREMLVGESSSMGAQAGNYKRRLYELNSNTSLNMPIPCTGPVCHPQHYETGMGHGTTMRPFSGIQNLNESPQIHSFHNQEASLHPGLCNHLPFSRSPQSSVGALSSLHVIEDVPNFHQTPQDTPSFEIMSSTSLNPPFLPVFTGMESATVGSFLWPGSVAGNSMLPHEIAMGDWEHIAANLGFPIGGSTHPSQNSSGGFDLTSPLAWAPGSNFLQNMRIPLAIINHPVLSAMNLEIQSNNRPSDSDSNSSEMSQGSELSFGTGNVVLVSQNQGASEETSENHAANAGNQGGSISIWAPGNNENRTRLMAGLRSTLQHLRSGGNLRPQDFLMLDHSIILHLLGEITGSSGVELDLENLAYEDLIALEEHMGIVDHGLTEEEIESHLRQEKFQLISQGSTEEIESCCICQEDYNENEDLGMLDCNHRFHAECIKEWLVRKNNCPICKQTALAAAGEEAGEEAGEEEEDGGDA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1666 664 SUPERFAMILY RING/U-box 597 643 - -
Sto11g1666 664 MobiDBLite consensus disorder prediction 1 30 - -
Sto11g1666 664 ProSiteProfiles Zinc finger RING-type profile. 598 639 IPR001841 -
Sto11g1666 664 CDD RING-H2_TTC3 597 639 - -
Sto11g1666 664 MobiDBLite consensus disorder prediction 465 492 - -
Sto11g1666 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 645 IPR013083 -
Sto11g1666 664 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 49 644 IPR045191 GO:0061630
Sto11g1666 664 Pfam Ring finger domain 597 639 IPR001841 -
Sto11g1666 664 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 49 644 - -
Sto11g1666 664 MobiDBLite consensus disorder prediction 12 26 - -
Sto11g1666 664 MobiDBLite consensus disorder prediction 432 451 - -
Sto11g1666 664 SMART ring_2 598 638 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1666 Sto-Chr11 15539137 15542317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1666 488 643 C3H Transcription Factor Family AT2G15530 41.509 9.29e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1666 - - jre:108985741 181.415