Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1665 atgGGCAATATGTACGGCTATGGTAATGGTAGTAATTGTAACATTATTATTAATCACTCTTCCTCTCCAACCTTATCTCCTTCACTTGATCCAGACGAATTCTCCCTTTTTCTCCATCACATTCTTCTCCCTCCATCTTCCTCCCTCATGCCTAAAACTCATCACTATGATTGCCAAATGCTTGAAGCTATGGCGGAAGAGGTGCCCTCCACTAAGTCCATTCCGACCAGAAGTTCATCAAAGAGAAGCAGAGCTGCCCAAGTTCACAACCTGTCTGAAAAGCAGCGAAGGAGAAGTAGGATCAACCAGAAAATGAAGGCTTTGCAGAATCTAATTCCAAATTCAAACAAGACTGATAAAGCTTCAATGCTTGATGAAGCTATTGAATATCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGAATGAGTTTGCATCCTATGTGCTTGCCTCAGATGAGAATGGAGTGTGGTGAAGAAAATAGGTCCAATCCTTTAAATTTGACAGCTACTAGTACTCTGCCTCTTTCATCCAATTTAATCAACTCAGAAACTTGTTTTGGGCATCTTGAACTCACAAGATCTTCTGAGATATGTGGGGAAGACGTATTGCAGCATCTGCATTTAAATGCAGACAACTCAGACATCAATACATTTGGTTGTTCTCAAGCTACCGAACTGAAGGACAATTGGGTACGTAGATTGCTGGAAGAGATCAGTCAGAAGTCGTTCTAA 747 0.4096 MGNMYGYGNGSNCNIIINHSSSPTLSPSLDPDEFSLFLHHILLPPSSSLMPKTHHYDCQMLEAMAEEVPSTKSIPTRSSSKRSRAAQVHNLSEKQRRRSRINQKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGMSLHPMCLPQMRMECGEENRSNPLNLTATSTLPLSSNLINSETCFGHLELTRSSEICGEDVLQHLHLNADNSDINTFGCSQATELKDNWVRRLLEEISQKSF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1665 248 Coils Coil 91 111 - -
Sto11g1665 248 Pfam Helix-loop-helix DNA-binding domain 87 135 IPR011598 GO:0046983
Sto11g1665 248 SMART finulus 90 140 IPR011598 GO:0046983
Sto11g1665 248 Coils Coil 124 144 - -
Sto11g1665 248 MobiDBLite consensus disorder prediction 67 99 - -
Sto11g1665 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 160 IPR036638 GO:0046983
Sto11g1665 248 Gene3D - 79 145 IPR036638 GO:0046983
Sto11g1665 248 MobiDBLite consensus disorder prediction 71 86 - -
Sto11g1665 248 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 54 187 IPR031066 -
Sto11g1665 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 134 IPR011598 GO:0046983
Sto11g1665 248 CDD bHLH_AtPIF_like 84 147 - -
Sto11g1665 248 PANTHER TRANSCRIPTION FACTOR SPATULA 54 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1665 Sto-Chr11 15531553 15535186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1665 52 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.000 2.06e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto11g1665 HLH 6.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1665 - - pvu:PHAVU_003G242900g 197.208