Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1655 ATGGAGCAGCGAAAACTTGTGGTTTTGGGTATTCCTTGGGAAGTCGATACTGAGGGATTGAGAGAATATATGAGCAAATTTGGTGAGTTGGAAGATTGTATTGTCATGAAGgaGCGATCAACTGGCAGGTCTCGTGGTTTTGGATATGTTACATTTGCATCTGTTGAGGATGCTAAGAATGCATTATCAAGTGAACATGCTCTTGGCAACAGGATGCTGGAAGTCAAAGTGGCTACACCAAAGGAGGAGATGAGAGCACCAGTAAAAAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACCATCTGTAACGGAAGCATCTTTTAGAAGtcaTTTTGAGAAATATGGTGATATAACAGATTTATACATGCCAAAGGATCAAGGCTCAAAAACACACCGTGGAATTGGTTTCATAACTTTTGCTAATGCAGAATCTGTGGAGAGTTTGATGACAGATACTCATGAACTGGGGGGTTCTACTGTGGTGGTTGATCGTGCAACACCGAAGGAAGATGATTTCAGGCCAATTAGTAGAATGCCACAGGGAGGGTATGGTGCATACAATGCATATATATCTGCAGCAACTAGATATGCTGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCTCAGTTTATGGAAGGGGAGAACCAGCTCGTGGAGCAGGCAAAAAGGTTTTTGTTGGCCGTCTTCCCCCTGAAGCAACGTCTGATGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTATATTAGACGTGTATGTTCCCAAgGATCCTAAGAGAGCAGGCCATAGAGGTTTTGGCTTTGTAACTTTTGCTGAAGAAGGTGTGGCAGATCGTGTCTCTCGGAGGCCTCATGAGATTTGTGGACATCAGGTTGCAATAGATTCAGCGACACCTCTTGATGACGCTGGGCCCAGTGGGAATTTTATCATGAATACTGTGGATTCTTTTGGGGGATATGGCGGTCCTGTGCGCACCTATGGAAGGATGTATGGGAGCCTGGACTTCGATGATTGGGGTTATGGCATTGGAAGTGGGAGACCATCAAGAGCAGATTGGAGGTACAGGCCATACTAG 1080 0.4481 MEQRKLVVLGIPWEVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVEDAKNALSSEHALGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEASFRSHFEKYGDITDLYMPKDQGSKTHRGIGFITFANAESVESLMTDTHELGGSTVVVDRATPKEDDFRPISRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGEPARGAGKKVFVGRLPPEATSDDLRQYFGRFGRILDVYVPKDPKRAGHRGFGFVTFAEEGVADRVSRRPHEICGHQVAIDSATPLDDAGPSGNFIMNTVDSFGGYGGPVRTYGRMYGSLDFDDWGYGIGSGRPSRADWRYRPY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1655 359 Gene3D - 221 304 IPR012677 -
Sto11g1655 359 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Sto11g1655 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Sto11g1655 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Sto11g1655 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Sto11g1655 359 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 359 - -
Sto11g1655 359 SUPERFAMILY RNA-binding domain, RBD 223 323 IPR035979 GO:0003676
Sto11g1655 359 SMART rrm1_1 225 296 IPR000504 GO:0003723
Sto11g1655 359 SMART rrm1_1 5 76 IPR000504 GO:0003723
Sto11g1655 359 SMART rrm1_1 93 164 IPR000504 GO:0003723
Sto11g1655 359 Gene3D - 86 193 IPR012677 -
Sto11g1655 359 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Sto11g1655 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 280 IPR000504 GO:0003723
Sto11g1655 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 64 IPR000504 GO:0003723
Sto11g1655 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 158 IPR000504 GO:0003723
Sto11g1655 359 Gene3D - 1 85 IPR012677 -
Sto11g1655 359 PANTHER OS01G0945800 PROTEIN 3 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1655 Sto-Chr11 15461178 15465619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1655 5 293 Eukaryotic Initiation Factors Gene Family AT2G23350 25.839 5.13e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1655 K14411 - qsu:112035746 670.233