Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1650 ATGTCGCAACGATCGGTGCCGGCGCCGTTTTTAACGAAGACGTATCAGTTGGTGGATGATCCGAGCACGGACGATGTGATATCTTGGAGCGATAGCGGCGACACGTTTGTGGTGTGGAAGCACGCGGAATTCGCGAAGGATCTGCTTCCAAATTATTTCAAGCACAACAACTTCTCTAGCTTTGTCCGCCAGCTTAACACCTATGGATTCCGAAAGATAGTACCCGACAAATGGGAATTTGCGAATGAATATTTCAAGCGAGGACACAAAGAGCTCCTCTCCGAAATCAAACGCCGGAAGACTCTGACGCAACCGGCCGCCGCGAAATCCGTATCGAACTCCGGTGGGGAGGTGGACGTGGGGTCCACCTCCACATCGTCGTCCGATTCGAAGAACAACCCGGGATCGGTGGAGACGACGACGGCTTCGCAATACGCAGAGCTGTCGGGAGAGAACAAGAAACTGAGGAGGGATAATGAGATTCTGAGCTCGGAGCTTGCGGAAGCGAAGAAGCAATGCGAGGAGCTGGTAGGTTTTCTGACGGAGTATCTGAAAGTGGGACCCGATCAGATCAATCGTATAATGCGGCAAGGAAGTAGTGGGTCCAGCcgcgaagaagaagaagatgatgatgatgacgacgaagaagaagaagaagaagaaaaggcgGTAGGTGAAGGTGGGGAAAGTTTGAaactgtttggggtttggttgaAAGGCgataaagagaaagagaaaatgaataCCAACAACAACCGCAAGAGGAGACGCGAAGACCCAATGGGCTTTGGTGGGCCTCACCAGAAGGAGCTGAACACTGTTGAATATGGTGCTGCCCCTATGAAGGTGATGATCAATTGA 861 0.4599 MSQRSVPAPFLTKTYQLVDDPSTDDVISWSDSGDTFVVWKHAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGHKELLSEIKRRKTLTQPAAAKSVSNSGGEVDVGSTSTSSSDSKNNPGSVETTTASQYAELSGENKKLRRDNEILSSELAEAKKQCEELVGFLTEYLKVGPDQINRIMRQGSSGSSREEEEDDDDDDEEEEEEEKAVGEGGESLKLFGVWLKGDKEKEKMNTNNNRKRRREDPMGFGGPHQKELNTVEYGAAPMKVMIN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1650 286 Coils Coil 145 172 - -
Sto11g1650 286 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Sto11g1650 286 MobiDBLite consensus disorder prediction 103 153 - -
Sto11g1650 286 MobiDBLite consensus disorder prediction 204 224 - -
Sto11g1650 286 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1650 286 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1650 286 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1650 286 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 283 - -
Sto11g1650 286 MobiDBLite consensus disorder prediction 194 279 - -
Sto11g1650 286 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1650 286 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1650 286 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 283 IPR027725 -
Sto11g1650 286 MobiDBLite consensus disorder prediction 105 148 - -
Sto11g1650 286 Gene3D - 2 101 IPR036388 -
Sto11g1650 286 MobiDBLite consensus disorder prediction 236 264 - -
Sto11g1650 286 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1650 Sto-Chr11 15432950 15435134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1650 2 278 HSF AT4G36990 54.930 5.30e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto11g1650 HSF_DNA-bind 9.3e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1650 K09419 - vvi:100247320 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3702 6 42014200 42015811 Sto11g1650 11 15432950 15435134 CCT