Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1646 ATGCAAGAAGCCTCAACTTTGGGCTCGCAGATGCAGAAGGTGGAAGACGAATCAGATGATAATTTAACCCTGGCTCAGTTAAGCAAGGACAAACGAAACGAGACGGTGGAATATGAGCACAAGCTCTTCAACATTAAGGAGAGATCAAAGCATTTGAGTCCTAGGACTAAGAAAGCTGTATCTGGTCAGGCAAGGAATAGCTTTGCAAGCTTCATTAATGTTGCAGTAGATGGGACATCCTCTCGCGGGAAGGCCAGGTCATCTGCTGTGATTCGTGCCGAGGAGGTTCAATTAAATTTAGAACCAGGATTCCCTAGTTTTGTGAAGTCATTAGTCCGATCACATGTCACTGGTTGTTTTTGGATGGGCCTCCCAGGTTTGTTCTGTAAAAACCACTTACCGGATAAGGATACAACGATCACTGTGGAAGATGAATCGGGCAAAGAGTACGAGTTGAAATATATCTCTTATAAGACAGGATTGAGTGCTGGTTGGAGACATTTTTCTGTTGTGCACAAATTGCAGGAAGGAGATGCTTTGATCTTCCAATTAGTTAAACCTACAAAATTTAAGAATTCTGTGAGGAAGGAATTCCTGATAAGTGATCCTAAGTATATGGTACGCCATTTTATCTCCATTCATGAGAGTCTTATAATTGATCTTGTCACAATACGAGCAACAGGAAGCCGCTTCAATGCAAGAACTGTGAAGGTAGCACTTGTATCTAAAAGAGAACTTTATGCCGTGTGTGCTTTTGAATGTTGTGTGTCCATGGCTATGATCAAGCTTGTCATGCCTCTTGTGGATAACGCACAGACTCGTAATGCTGTAGCTTCTCATAGCTCAAAGAGAAAACATGATAAATCTGTCCCGGTAGTCATCCCGGAGAAAAAGAAGACTAGAGTCTCAAGATTGGTTCCTAAGGTTAGGCAGCCAGCAGAACAATCTGAAAATGATAGTGAGAAAGTTCGTTCAGAAGTATTGGAGGGCTTCTTCAAGCCAATGCTTGAATTCAAAGATATAAAGAGCTTTGAACATTTCAGCATCATAATTAGTGGAAAGCCAATAGATGCTGAGATTTCTAAGGAGGTTCGAAACAAGTACTACAAGCTCTGCCACAGCCAACAAGCTTTTCTTCATGACAATCTCATAGAGGGCATGAACTACAAACTGATTGCTGGTATTATATCAGAAACTGTTGATATTGCCGAAGCTATAAAACGTAATACTTCGAGTTCTGAATTTGCTAAATGGGATAAAATTCTGCGAGCCTTTGAGCATTTGGGCATGGAGGTTGAATTTTTAAGACGGCGAATACGCCGGCTTGTAAGCATTAGCTATGAAACAGGTGCCCCAGGAACCAAAAAGTACTTGGAGCGTAGAACTGAAAGCAGTCGAGCAAATGATGAAATAAAAAACGTTGAGACAAAGCTGGAGGAATTGAAAGCAGCATGTAATGATTTTGGTGATTATCTTGAGAGTTTGAAGTACAAATAA 1497 0.4102 MQEASTLGSQMQKVEDESDDNLTLAQLSKDKRNETVEYEHKLFNIKERSKHLSPRTKKAVSGQARNSFASFINVAVDGTSSRGKARSSAVIRAEEVQLNLEPGFPSFVKSLVRSHVTGCFWMGLPGLFCKNHLPDKDTTITVEDESGKEYELKYISYKTGLSAGWRHFSVVHKLQEGDALIFQLVKPTKFKNSVRKEFLISDPKYMVRHFISIHESLIIDLVTIRATGSRFNARTVKVALVSKRELYAVCAFECCVSMAMIKLVMPLVDNAQTRNAVASHSSKRKHDKSVPVVIPEKKKTRVSRLVPKVRQPAEQSENDSEKVRSEVLEGFFKPMLEFKDIKSFEHFSIIISGKPIDAEISKEVRNKYYKLCHSQQAFLHDNLIEGMNYKLIAGIISETVDIAEAIKRNTSSSEFAKWDKILRAFEHLGMEVEFLRRRIRRLVSISYETGAPGTKKYLERRTESSRANDEIKNVETKLEELKAACNDFGDYLESLKYK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1646 498 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 12 446 - -
Sto11g1646 498 CDD B3_DNA 105 191 IPR003340 GO:0003677
Sto11g1646 498 SMART B3_2 107 193 IPR003340 GO:0003677
Sto11g1646 498 MobiDBLite consensus disorder prediction 13 28 - -
Sto11g1646 498 Coils Coil 464 484 - -
Sto11g1646 498 Gene3D - 86 197 IPR015300 -
Sto11g1646 498 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 446 IPR044837 -
Sto11g1646 498 SUPERFAMILY DNA-binding pseudobarrel domain 102 194 IPR015300 -
Sto11g1646 498 MobiDBLite consensus disorder prediction 1 28 - -
Sto11g1646 498 Pfam B3 DNA binding domain 107 194 IPR003340 GO:0003677
Sto11g1646 498 ProSiteProfiles B3 DNA-binding domain profile. 107 198 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1646 Sto-Chr11 15405664 15408868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1646 86 191 B3 DNA Binding Superfamily AT5G42700 52.830 1.78e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto11g1646 B3 2.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1646 - - gmx:100819237 438.343