LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto11g1628	ATGGGTCTCTGCAACTCCAAGCCCTCTGCGAATCTCACACTCTCGTCGTCTCCCAAATCCGATACTGATTCGCCCATTGCTAACAACGTGCCTGCTAGAGACAACGCCGTGCCTGTTAATCACAGTCCTAAACCTCATTCCGCCTCTGTGAATGGGCAAAACCCTAGCAGGGAGAAGAAGGAGTTGGAGAATGGTAAGAAATCGCCGTTCTTTCCGTTTTATAGTCCAAGTCCGGCGCACTATTTGTTCTCGAAGAAGTCCCCTGCGAGATCTCCGGCGAATGGTAGCTCGAACTCCACGCCGAAGAGGTTCTTCAAGCGACCGTTCCCGCCGCCGTCTCCGGCCAAGCACATAAGAGCTGTGCTGGCCAGGCGACATGGGTCGGTGAAGCCGAATGAAGCGACCATACCGGAAGGGAGTGAAGCAGAGGTGGGAGCTGGGCTTGATAAGAGTTTTGGATTCTCCAAGCATTTCGGGAACAAGTATGAATTGGGAGATGAGGTTGGTAGAGGACACTTTGGATACACTTGTGCTGCCAAGTTTAAAAAGGGTGAGCTCAAGGGCCAACAGGTGGCTGTGAAAGTTATCCCCAAAGCAAAGATGACCACTGCCATCGCTATTGAGGATGTGAGAAGGGAAGTAAAAATATTGAGAGCTTTAACAGGACATAAGAATCTAGTACAATTCTATGATGCTTATGAAGACCAGGATAATGTCTATATAGTAATGGAgTTGTGTGAAGGAGGGGAGCTGTTGGACAGAATACTATCAAGAGGTGGGAAATACTCGGAGGATGATGCAAAAGCTGTATTGATACAAATACTGAATGTTGTTGCGTTCTGCCATTTACAGGGTGTTGTGCATCGTGATCTTAAACCTGAGAATTTCTTGTTCACGTCGAAGGATGAAAACTCAGAACTGAAGGCCATAGATTTTGGGTTGTCAGATTTTGTAAAACCAGATGAAAGGCTTAATGATATTGTTGGCAGTGCTTACTATGTGGCTCCTGAAGTTCTACATAGATCTTACAGTACAGAGGCTGATGTCTGGAGTATTGGCGTGATTGCATATATTCTATTATGTGGAAGCCGACCATTTTGGGCTCGGACTGAGTCTGGAATTTTCCGTACTGTATTGAAAGCTGATCCAATTTTTGATGAACCTCCATGGCCTTCTCTGTCAGctgaggcaaaagactttgtTAAACGGCTGCTGAATAAAGATCCACGGAAAAGAATGACTGCTGCACAAGCATTAAGTCATCCCTGGATTAAAAATTACAAGGATGTAAAAGTACCTTTGGATATTCTAATATTCAAGCTCATGAAGGCATATATGCGTTCCTCATCTCTACGAAAAGCAGCTTTAAGGGCACTGTCTAAGACGTTAACTGCTGATGAGCTATTCTATTTGAAGGAGCAGTTTATGCTTTTAGAGCCTAACCGAAGTGGTACCATAAGCTTGGAAAATATCAAAGCGGTCTTGATGAAAAATGCAACAGATGCCATGAAAGAGTCCCGCATTCCTGACTTTCTGGCTTCACTTAATGCATTGCAATATAGAAGGATGGATTTTGATGAGTTCTGTGCAGCTGCTCTTAGTGTCCATCAATTTGAAGCTCTTGGTCGGTGGGAGCAACATGCTCGCTGTGCCTATGAACTTTTTGAAAAGGATGGAAACCGGGCTATTGTCATTGAGGAACTAGCTTCGGAGCTTGGGCTTGGTCCATCTGTTCCTGTTCATGCTGTTCTTCATGATTGGATTAGGCACACCGATGGAAAGTTAAGTTTCCTAGGGTTTGTCAAATTGTTGCATGGACCATCTCGAAGTCTTGCAAAAGCACATTAG	1848	0.4443	MGLCNSKPSANLTLSSSPKSDTDSPIANNVPARDNAVPVNHSPKPHSASVNGQNPSREKKELENGKKSPFFPFYSPSPAHYLFSKKSPARSPANGSSNSTPKRFFKRPFPPPSPAKHIRAVLARRHGSVKPNEATIPEGSEAEVGAGLDKSFGFSKHFGNKYELGDEVGRGHFGYTCAAKFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDQDNVYIVMELCEGGELLDRILSRGGKYSEDDAKAVLIQILNVVAFCHLQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRTVLKADPIFDEPPWPSLSAEAKDFVKRLLNKDPRKRMTAAQALSHPWIKNYKDVKVPLDILIFKLMKAYMRSSSLRKAALRALSKTLTADELFYLKEQFMLLEPNRSGTISLENIKAVLMKNATDAMKESRIPDFLASLNALQYRRMDFDEFCAAALSVHQFEALGRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKAH	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto11g1628	615	Gene3D	Phosphorylase Kinase; domain 1	155	251	-	-
	Sto11g1628	615	MobiDBLite	consensus disorder prediction	84	115	-	-
	Sto11g1628	615	ProSiteProfiles	Protein kinase domain profile.	162	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto11g1628	615	PANTHER	SERINE/THREONINE-PROTEIN KINASE	66	610	-	-
	Sto11g1628	615	ProSitePatterns	Protein kinases ATP-binding region signature.	168	194	IPR017441	GO:0005524
	Sto11g1628	615	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	286	298	IPR008271	GO:0004672\|GO:0006468
	Sto11g1628	615	SUPERFAMILY	Protein kinase-like (PK-like)	159	455	IPR011009	-
	Sto11g1628	615	CDD	STKc_CAMK	161	423	-	-
	Sto11g1628	615	PANTHER	CALMODULIN-DOMAIN KINASE CDPK PROTEIN	66	610	-	-
	Sto11g1628	615	Pfam	Protein kinase domain	162	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto11g1628	615	SMART	serkin_6	162	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto11g1628	615	ProSiteProfiles	EF-hand calcium-binding domain profile.	466	501	IPR002048	GO:0005509
	Sto11g1628	615	Gene3D	Transferase(Phosphotransferase) domain 1	252	447	-	-
	Sto11g1628	615	Gene3D	-	448	606	-	-
	Sto11g1628	615	MobiDBLite	consensus disorder prediction	1	71	-	-
	Sto11g1628	615	SUPERFAMILY	EF-hand	452	606	IPR011992	-
	Sto11g1628	615	MobiDBLite	consensus disorder prediction	89	103	-	-
	Sto11g1628	615	MobiDBLite	consensus disorder prediction	1	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto11g1628	Sto-Chr11	15247337	15252214	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto11g1628	1	615	EF-hand Containing Proteins	AT3G50530	76.816	0.0	1002

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Sto11g1628		Pkinase	2e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto11g1628	K00924		-	jre:109018972	1036.94