LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto11g1626	atggtGAATCCAAGATGCTACTTGGACATCAGCATTGGCGGCGAGTTAGAGGGCAGAATTGTGGTAGAGCTCTTCAAAGATGTCGTACCCAAAACCGCCGAGAATTTCAGGGCTCTTTGTACTGGTGAGAAAGGCGTCGCTCCTCACACCGGTGTTCCTCTGCATTACAAGGGGGTTCGTTTTCATCGTATCATCAAAGGTTTCATGATACAAGGCGGAGATATCTCAGCCGGGGATGGTACCGGGGGAGAATCCATTTATGGCTTGAAATTTGAAGATGAAAACTTTGAGTTGAAACATGAAAGGAAGGGTATGCTGTCAATGGCTAATGCAGGTCCAAATACCAATGGATCTCAATTTTTCATTACCACTACTCGGACTCCTCATTTGGACGGGAAACATGTAGTGTTTGGGAAGGTAATCAAAGGGATGGGAGTTGTTCGTTCTGTTGAACATGTTATTACGGGGGAAGGTGATTGTCCCACCCAAGATGTTATTGTTGCTGATTGTGGAGAATTAGCTGAAGACGAGGATGATGGAACCATTGACTTCTTTAAAGATGGTGATACTTTTCCTGACTGGCCAGCTGACCTAGATGTCAAACCAGATGAAATTTCTTGGTGGATTGAGGCTGTAGATTCAATCAAAAGTCTGGGAAATGAACAGTACAAGAAACAAGACTATAAATCAGCTGTCCGGAAGTATCGTAAAGCTTTGCGCTATTTGGATGTCTGTTGGGAGAAGGACGACATTGATCAAGGTCAACCTGAGAAGAGCACTGCTCTAAGGAAGACGAAATCTCAAATTTTCACCAACAGTGCTgctTGTAAACTGAAATTAGATGATCTACAAGGAGCATTGTTGGATTCTGACTTTGCATTGCATGATGGAGACAATGTCAAAGCTCTGTTCCGCAAAGGCCAGGCGTGTATGGCACTAAATGACCTGGATGCTGCTGTTCAATGCTTTAAAAAAGCATTGGAGTTGGAGCCAAATGATGGAGGAATTAAAAAAGAGCTTGCAGCTGCGAGGAAAAAGATTGCTGATAGACGTGATCAAGAGAAAAAGGCTTATTCTAGAATGTTCAAATAG	1092	0.4295	MVNPRCYLDISIGGELEGRIVVELFKDVVPKTAENFRALCTGEKGVAPHTGVPLHYKGVRFHRIIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTPHLDGKHVVFGKVIKGMGVVRSVEHVITGEGDCPTQDVIVADCGELAEDEDDGTIDFFKDGDTFPDWPADLDVKPDEISWWIEAVDSIKSLGNEQYKKQDYKSAVRKYRKALRYLDVCWEKDDIDQGQPEKSTALRKTKSQIFTNSAACKLKLDDLQGALLDSDFALHDGDNVKALFRKGQACMALNDLDAAVQCFKKALELEPNDGGIKKELAAARKKIADRRDQEKKAYSRMFK	363

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto11g1626	363	SUPERFAMILY	TPR-like	210	359	IPR011990	GO:0005515
	Sto11g1626	363	CDD	cyclophilin_ABH_like	4	171	-	-
	Sto11g1626	363	SMART	tpr_5	212	245	IPR019734	GO:0005515
	Sto11g1626	363	SMART	tpr_5	300	333	IPR019734	GO:0005515
	Sto11g1626	363	Gene3D	Tetratricopeptide repeat domain	212	363	IPR011990	GO:0005515
	Sto11g1626	363	SUPERFAMILY	Cyclophilin-like	1	177	IPR029000	-
	Sto11g1626	363	Gene3D	-	1	180	IPR029000	-
	Sto11g1626	363	ProSiteProfiles	TPR repeat profile.	300	333	IPR019734	GO:0005515
	Sto11g1626	363	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	8	171	IPR002130	GO:0000413\|GO:0003755
	Sto11g1626	363	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	56	73	IPR020892	GO:0003755\|GO:0006457

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto11g1626	Sto-Chr11	15217768	15221110	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto11g1626	17	170	U-box Gene Family	AT5G67530	43.871	1.03e-33	129

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto11g1626	K05864		-	gmx:100803839	644.425

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