Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1626 atggtGAATCCAAGATGCTACTTGGACATCAGCATTGGCGGCGAGTTAGAGGGCAGAATTGTGGTAGAGCTCTTCAAAGATGTCGTACCCAAAACCGCCGAGAATTTCAGGGCTCTTTGTACTGGTGAGAAAGGCGTCGCTCCTCACACCGGTGTTCCTCTGCATTACAAGGGGGTTCGTTTTCATCGTATCATCAAAGGTTTCATGATACAAGGCGGAGATATCTCAGCCGGGGATGGTACCGGGGGAGAATCCATTTATGGCTTGAAATTTGAAGATGAAAACTTTGAGTTGAAACATGAAAGGAAGGGTATGCTGTCAATGGCTAATGCAGGTCCAAATACCAATGGATCTCAATTTTTCATTACCACTACTCGGACTCCTCATTTGGACGGGAAACATGTAGTGTTTGGGAAGGTAATCAAAGGGATGGGAGTTGTTCGTTCTGTTGAACATGTTATTACGGGGGAAGGTGATTGTCCCACCCAAGATGTTATTGTTGCTGATTGTGGAGAATTAGCTGAAGACGAGGATGATGGAACCATTGACTTCTTTAAAGATGGTGATACTTTTCCTGACTGGCCAGCTGACCTAGATGTCAAACCAGATGAAATTTCTTGGTGGATTGAGGCTGTAGATTCAATCAAAAGTCTGGGAAATGAACAGTACAAGAAACAAGACTATAAATCAGCTGTCCGGAAGTATCGTAAAGCTTTGCGCTATTTGGATGTCTGTTGGGAGAAGGACGACATTGATCAAGGTCAACCTGAGAAGAGCACTGCTCTAAGGAAGACGAAATCTCAAATTTTCACCAACAGTGCTgctTGTAAACTGAAATTAGATGATCTACAAGGAGCATTGTTGGATTCTGACTTTGCATTGCATGATGGAGACAATGTCAAAGCTCTGTTCCGCAAAGGCCAGGCGTGTATGGCACTAAATGACCTGGATGCTGCTGTTCAATGCTTTAAAAAAGCATTGGAGTTGGAGCCAAATGATGGAGGAATTAAAAAAGAGCTTGCAGCTGCGAGGAAAAAGATTGCTGATAGACGTGATCAAGAGAAAAAGGCTTATTCTAGAATGTTCAAATAG 1092 0.4295 MVNPRCYLDISIGGELEGRIVVELFKDVVPKTAENFRALCTGEKGVAPHTGVPLHYKGVRFHRIIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTPHLDGKHVVFGKVIKGMGVVRSVEHVITGEGDCPTQDVIVADCGELAEDEDDGTIDFFKDGDTFPDWPADLDVKPDEISWWIEAVDSIKSLGNEQYKKQDYKSAVRKYRKALRYLDVCWEKDDIDQGQPEKSTALRKTKSQIFTNSAACKLKLDDLQGALLDSDFALHDGDNVKALFRKGQACMALNDLDAAVQCFKKALELEPNDGGIKKELAAARKKIADRRDQEKKAYSRMFK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1626 363 SUPERFAMILY TPR-like 210 359 IPR011990 GO:0005515
Sto11g1626 363 CDD cyclophilin_ABH_like 4 171 - -
Sto11g1626 363 SMART tpr_5 212 245 IPR019734 GO:0005515
Sto11g1626 363 SMART tpr_5 300 333 IPR019734 GO:0005515
Sto11g1626 363 Gene3D Tetratricopeptide repeat domain 212 363 IPR011990 GO:0005515
Sto11g1626 363 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Sto11g1626 363 Gene3D - 1 180 IPR029000 -
Sto11g1626 363 ProSiteProfiles TPR repeat profile. 300 333 IPR019734 GO:0005515
Sto11g1626 363 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Sto11g1626 363 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Sto11g1626 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Sto11g1626 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Sto11g1626 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Sto11g1626 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Sto11g1626 363 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Sto11g1626 363 ProSiteProfiles TPR repeat region circular profile. 300 333 - -
Sto11g1626 363 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 363 - -
Sto11g1626 363 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 363 - -
Sto11g1626 363 Pfam Tetratricopeptide repeat 300 333 IPR001440 GO:0005515
Sto11g1626 363 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1626 Sto-Chr11 15217768 15221110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1626 17 170 U-box Gene Family AT5G67530 43.871 1.03e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1626 K05864 - gmx:100803839 644.425