Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1622 ATGAGAAGATCCAGAGCCGGCACGGATCTGAAGAGGAAACCGGGTCGAGCAGAAGAAAGGAAGATCCACGGAGTTGAGTATGGCCTTAATCTGCTTCTTCTCGGTGGTAAGCAAGTGCTTCCTCGAAACCGATCCGACGTCCTGTTTCTTGCCGAGAAGGTTCTGGTAGGAAACAACGGCTGGTATTCGACCTTGCATTCTATCCCTAGCAGCGATTCTACTACCACTGCACTCTCTAGGGATAGCTTGGATCGTGTGGTGTCCGTATAtctcacagtagagagagagagagaaatgtcATCAACGAGTACGAGTTCTCCATGCGCGGCGTGCAAGTGTCTGAGGCGAAAATGCGTAGAAGACTGCATATTCGCACCGCACTTCCCACCCAAAGACACTGAAAGGTTCACAACCGTCCACAAGGTGTTCGGCGCAAGCCATCTGACTAGAATTCTGAGCAACCTCCAATTGTCGGACCGCGACCTGGCCGTCAAGTCTCTGGTCTACCAAGCCGAGGCTCGGATCCAGGACCCTGTGTACGGCTGCGTGGGCTTCATTTCCCTTCAACAGAAAAAACACAAGGCACTCCTCAACGAAATCAAAAAGCTCAGGACTGAGCTCTCCACTGTGTTGGGACCTCAAATTCtgcaatccaagcctattcgcGTACCCCGTGATGGAATGTTCGAGAAGGAGTATCCTGAATTTGACAAGACGCACCCGCGGCCGTCCAGGGCGAGGATGGCAGCCAGACCGCCATTTCCACCGCGTCGTCCATTGGTGATTGGTGAACCTCATCAGGCGCAGCAGTACCAACAGCAATCGCAGGTACCTTATTATGCACCTGATCTGCCGCCGCCGTCATCCATGGCCGGGAAGGCAGCCAAGCCGCCACTTCCACCACGTGGGTTGGTGATTCGTGAACCTCAATCGCAGCAGCACCATCAACAATCGCAGGTACCTTATTATGCACCTGATCAGCCGCTGCTGCTGCCGTCCAAGACCAGGAAGGCAGCCAGGCCCCAACTTCGACGGCGTGGGTTGGTGATTCGTGAACCTCAGGCGCAGCAGCACCATCAACAATCGCAGGTACCTTATTATGCACCTGATCAGCCGCCGCCGTCCACGGCCGAGATGGCAGCCAGGCCGTCACTTCCACGGCGTGGGTTGGTGATTCGTGAACCTCATCAGGCGCAGCAACACCATCAACAATCGCAGGTACCTTATTATGCACCTGATCAGCCGCCGCCGTCCACGGCCGAGATAGCAGCCAGACCGCCACTTCCACGGCGTGGGTTGGTGATTCGTGAACCTCAGGCGCAGCAACACCATCAACAATCGCAGGTACCTTATTATGCACCTGATCAGCCGCCGCCGTCCACGTCCGAGATGGCAGCCAGGCCACCACTTCCACCGCGTGGGTTGGTGATTCGTGAACCTCAGCCGGAGCAGCACCATCAACAATCGCAAGTACCTTATTATGCACCTGATCAGCCGCCGCCGTCCACGGCTGAGATGGCAGCCAGGCCGCCACTTCCACCGCGTGGGTTGGTAATTCGTGAACCTCAGCCGGAGCAGCACCATCAACAATCGAATGATCAGCCGCAGATACCTTATTATGCACCTGATCAGGCGCCGCTACACCTTCATCATTTGCAGCAGCAGCAGTTAATGGATGCGCAGCTGGCGGCCGCTATAGAGGCTGAGCAATTAGCAATGGCTATGGAGGGGCAGCAATTGGAGTCGGCGCTGGAGGCGCTGGAGTGTGATGAAGAACTGTGGAAGCTGCTGCAGCATGAGGAGCAGAGGGAGAAGGAGCAGCAAGAGTTTTTTAGGCTCAATAGTGGCGGGAGTTTTGAAACGAGTACAATTTCCGAGAGTAGATTTAATCAAGTGGATGAGAATCCTTTCGATCAGATGCAACTACAACAAGGGGAGAATCAGAACCAGATGCTACTACAGGAAGGGGAACATTATAGTCACCAGAACCATGAGCAACACCAAATGCAACTGCAACAAGGGGAACACTATAACCACCAGATGCAAGTACAACAAGAGGAGCATCATAATCACCAGATGCTACTAATACAGGATGGGGAACATTATAGTCATCAGAACCATGAGCAGCACCAAATGCAACTGCAACAAGGGGAACACTATAACCACCAGATGCAAGTACAACAAGAGGAGCATCATAATCACCAGATGCTACTACAGGATGGGGAACATTATAGTCACCAGAACCATGAGCAGCACCAAATGCAACTGCAACAAGGGGAACACTATAACCACCAGATGCATGTACAACAAGAGGATCATTATAATCACCAGATGCTACTACAGGATGGGGAACATTATAATCATCAGAACCATGAGCAGCACCAAATACAATTGCAGCAAGGAAATCACTATAACCACCAGAACCAAGAGCACCACCATATGCAAGTACCGCAAGAGGAACATTATAATCACCAGAAGTATGAGCACCATCAGATGCAATTACAACAAGGGGAGAATCAGAACCAGATGCTACTACAGGAAGGGGAACATTATAGTCACCAGCAGCAATTGGCGGCGGCGCTAGAGGCGATGGAGCTTGATGAAGAACTGAACAAGCTGTTGCAGGAGGAGGAGCAGAGGGAGAAGGATCAGCAAGAGTTTTTGAGGCATAATAGTGGCGGGGAGTTTGGGACGAGTTCGATTCCCGAGAATAGATTTAATCAGGCGGATGAGAATCCTTTCGATCAGTTGCAACTAGAGCAAGAGGAATATAGTAACCACCAGATTCATCAACTACAGCAAGGGGAGAATCAGAACCAGATGCTACTACAGGAAGGGGAACTGCAGCAAGGGGAACACTATAACCACCAAAACCATGAGCACCAACAAATGCAAGTATTGCAAGAGGAACATTATAATCACCAGATGCAATTACAACAAGGAGAACATTATGATGATCACCTGAGCCATGAGCTCCATCAGATGCAATTACATCAAGGGGAACATTATAACCACCAGAACTATGAGCACCACCAAATGCAAGGGGAACTTCATAACCATCAACACCACCAGATGCCACTACAACAAGAGAAACATCATGATGACTATCGGCACCACCAGATGCAAATAGAGCAAGGGGAGCATCATACACATCAGCACCACCAGATACAACTCCAGCAAGGGGAACATCATACCCTTCCGCACCATCAGCTCCACCATATGCAAATATCCCAACAAGAGCTGCAAGAACAATGGGAGAAGCTGCAACTATAA 3273 0.502 MRRSRAGTDLKRKPGRAEERKIHGVEYGLNLLLLGGKQVLPRNRSDVLFLAEKVLVGNNGWYSTLHSIPSSDSTTTALSRDSLDRVVSVYLTVEREREMSSTSTSSPCAACKCLRRKCVEDCIFAPHFPPKDTERFTTVHKVFGASHLTRILSNLQLSDRDLAVKSLVYQAEARIQDPVYGCVGFISLQQKKHKALLNEIKKLRTELSTVLGPQILQSKPIRVPRDGMFEKEYPEFDKTHPRPSRARMAARPPFPPRRPLVIGEPHQAQQYQQQSQVPYYAPDLPPPSSMAGKAAKPPLPPRGLVIREPQSQQHHQQSQVPYYAPDQPLLLPSKTRKAARPQLRRRGLVIREPQAQQHHQQSQVPYYAPDQPPPSTAEMAARPSLPRRGLVIREPHQAQQHHQQSQVPYYAPDQPPPSTAEIAARPPLPRRGLVIREPQAQQHHQQSQVPYYAPDQPPPSTSEMAARPPLPPRGLVIREPQPEQHHQQSQVPYYAPDQPPPSTAEMAARPPLPPRGLVIREPQPEQHHQQSNDQPQIPYYAPDQAPLHLHHLQQQQLMDAQLAAAIEAEQLAMAMEGQQLESALEALECDEELWKLLQHEEQREKEQQEFFRLNSGGSFETSTISESRFNQVDENPFDQMQLQQGENQNQMLLQEGEHYSHQNHEQHQMQLQQGEHYNHQMQVQQEEHHNHQMLLIQDGEHYSHQNHEQHQMQLQQGEHYNHQMQVQQEEHHNHQMLLQDGEHYSHQNHEQHQMQLQQGEHYNHQMHVQQEDHYNHQMLLQDGEHYNHQNHEQHQIQLQQGNHYNHQNQEHHHMQVPQEEHYNHQKYEHHQMQLQQGENQNQMLLQEGEHYSHQQQLAAALEAMELDEELNKLLQEEEQREKDQQEFLRHNSGGEFGTSSIPENRFNQADENPFDQLQLEQEEYSNHQIHQLQQGENQNQMLLQEGELQQGEHYNHQNHEHQQMQVLQEEHYNHQMQLQQGEHYDDHLSHELHQMQLHQGEHYNHQNYEHHQMQGELHNHQHHQMPLQQEKHHDDYRHHQMQIEQGEHHTHQHHQIQLQQGEHHTLPHHQLHHMQISQQELQEQWEKLQL 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1622 1090 Pfam Lateral organ boundaries (LOB) domain 107 203 IPR004883 -
Sto11g1622 1090 Coils Coil 186 206 - -
Sto11g1622 1090 Coils Coil 857 886 - -
Sto11g1622 1090 MobiDBLite consensus disorder prediction 494 508 - -
Sto11g1622 1090 MobiDBLite consensus disorder prediction 1015 1034 - -
Sto11g1622 1090 Coils Coil 589 609 - -
Sto11g1622 1090 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 102 217 - -
Sto11g1622 1090 MobiDBLite consensus disorder prediction 350 541 - -
Sto11g1622 1090 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 102 217 - -
Sto11g1622 1090 Coils Coil 827 847 - -
Sto11g1622 1090 MobiDBLite consensus disorder prediction 234 328 - -
Sto11g1622 1090 MobiDBLite consensus disorder prediction 309 323 - -
Sto11g1622 1090 MobiDBLite consensus disorder prediction 524 538 - -
Sto11g1622 1090 MobiDBLite consensus disorder prediction 452 466 - -
Sto11g1622 1090 ProSiteProfiles LOB domain profile. 106 207 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1622 Sto-Chr11 15190013 15196395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1622 102 216 AS2 family AT5G66870 52.174 6.25e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto11g1622 LOB 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1622 - - mtr:MTR_5g017950 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1622 11 15190013 15196395 Sto6g3722 6 42160496 42168545 CCT