Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1581 ATGACAAACAACATCGGAGAAAACCTTATCCACTACAAAGTCACCGACCCGAGTGACGACCCGATTAGCCCGAAACCCGGGACGTTAAGATACGGCGCGTCCGTCATCCAAGGCAAAGTATGGATCACATTCAAAACAGACATGCGCATTAGCCTCACCAAACCCCTCCTCGTGAGCAGCTTCACGGCGATCGACGGCCGCGGCGTCGACATCCACATCGCCGGGAATGCGTGCCTGATGATCTACAAGGCTACGAATGTCATTATCCATGGGCTTCGGATCCATCACTGCAGGGCCCAAGGTGGTGGGATGGTGatgggaggggaagggaaggtgaTTAGTGTGAGTCACGTGGATGGGGACGCTATTAGATTAGTAACGGCTTCTAAGATTTGGATTGACCATAATACCCTTTATAACTGTGAGGATGGGCTCCTGGACGTGACGAGAGGTTCGACGGATGTAACGGTGTCTAATAATTGGTTCAGAGAGCAGGACAAGGTGATGCTTCTGGGACACGATGATGGCTTCGTGAGGGACCGAAATATGAAGGTCACTGTGGTGTACAACCATTTTGGACCCAACTGCAATCAGCGCATGCCAAGGATACGACATGGGTATGCACATGTGGCGAACAATCTGTATCAGGGATGGGTGCAATATGCGATTGGTGGGAGCATGGGGCCGAGCTTGAAGAGCGAAGCGAACCTGTTCATAGCACCCAGGTCTGGGAGTAAAGAGGTCACATGGAGGAAAAACAGCAGTGTCAATGGGGGAGGGGGTGGATGGGAATTTCACTCGGTGAGGGACGAGTTTGAAAATGGAGCTTCCTTCACTGAGACCATAGGTGGACGAGTGCCCAAGCCCAATTATAACCATCAACAGAGGTTTGTAGTTGCAGATGCCAAAAGTGTGAGGTCGTTGACTATCTCGTCAGGCGCTTTACGATGCACTAAAACTTCTAGGTGCTGA 972 0.5 MTNNIGENLIHYKVTDPSDDPISPKPGTLRYGASVIQGKVWITFKTDMRISLTKPLLVSSFTAIDGRGVDIHIAGNACLMIYKATNVIIHGLRIHHCRAQGGGMVMGGEGKVISVSHVDGDAIRLVTASKIWIDHNTLYNCEDGLLDVTRGSTDVTVSNNWFREQDKVMLLGHDDGFVRDRNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMGPSLKSEANLFIAPRSGSKEVTWRKNSSVNGGGGGWEFHSVRDEFENGASFTETIGGRVPKPNYNHQQRFVVADAKSVRSLTISSGALRCTKTSRC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1581 323 Pfam Pectate lyase 63 238 IPR002022 -
Sto11g1581 323 PANTHER PECTATE LYASE 1 320 - -
Sto11g1581 323 PANTHER PECTATE LYASE 18-RELATED 1 320 IPR045032 GO:0030570
Sto11g1581 323 PRINTS Pollen allergen Amb family signature 18 43 IPR018082 -
Sto11g1581 323 PRINTS Pollen allergen Amb family signature 55 71 IPR018082 -
Sto11g1581 323 PRINTS Pollen allergen Amb family signature 119 140 IPR018082 -
Sto11g1581 323 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Sto11g1581 323 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Sto11g1581 323 PRINTS Pollen allergen Amb family signature 263 287 IPR018082 -
Sto11g1581 323 PRINTS Pollen allergen Amb family signature 294 317 IPR018082 -
Sto11g1581 323 Gene3D - 4 316 IPR012334 -
Sto11g1581 323 SUPERFAMILY Pectin lyase-like 11 281 IPR011050 -
Sto11g1581 323 SMART amb_all 47 244 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1581 Sto-Chr11 14913251 14914326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1581 1 248 Polysaccharide Lyase AT5G09280 73.387 3.57e-146 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1581 K01728 - gmx:100780437 545.428