Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1579 ATGGCGAGTGGCTTTGGGGAATCAACGAGCACGTATCCTCAGAGCCCATCTTGCTCGGCGAATGGTTCTAATGATGCTGGAGACTTTGAATGTAATATCTGTTTTGATTTGGCTCAAGATCCAGTTATCACCCTGTGTGGTCATCTATTCTGCTGGCCATGCCTCTACCGATGGCTCCACCATCACTCACATTCTCAAGAATGTCCAGTATGTAAGGCTCTTATACAAGAGGAAAAATTGGTTCCTCTGTATGGGAGGGGGAAAACACAGACTGATCCCAGAACAAAATCATACCCTGGAATGGAAATTCCCCACCGCCCTACAGGGCAGAGGCCTGAAACAGGACCTCCACCGGAAGCCAATCCCTTTGGGAATTATGGGTTTGGATTGATGGGAGGGTTCATACCCATGGCAACAGCAAGGATTGGAAATTTCACTCTTTCCACAACATTTGCTGGTTTTATCCCATCTCTTCTTAACTTTCAATACCCTGCCTTTCAAGATGCCACTGTCTATGGAACTACCTCTGGTTATCCATTTGGGTTTAATACTTTTCATGGAGCGCACGCTCATGGTTTTCCTCAGCCAACTGGTCAAGGGCAAGGGCACAGGCATGAGGACAATGTGTTGAAGAATCTTTTTTTGTTGATTGGCGCTCTTGTTATCCTTGCTCTCATTTTTGGGTGGTAA 690 0.4623 MASGFGESTSTYPQSPSCSANGSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALIQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPTGQRPETGPPPEANPFGNYGFGLMGGFIPMATARIGNFTLSTTFAGFIPSLLNFQYPAFQDATVYGTTSGYPFGFNTFHGAHAHGFPQPTGQGQGHRHEDNVLKNLFLLIGALVILALIFGW 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1579 229 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Sto11g1579 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sto11g1579 229 SMART ring_2 31 71 IPR001841 -
Sto11g1579 229 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 227 - -
Sto11g1579 229 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Sto11g1579 229 SUPERFAMILY RING/U-box 27 84 - -
Sto11g1579 229 CDD RING-HC_AtRMA_like 29 73 - -
Sto11g1579 229 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Sto11g1579 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Sto11g1579 229 MobiDBLite consensus disorder prediction 86 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1579 Sto-Chr11 14889744 14890433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1579 21 227 C3H Transcription Factor Family AT2G23780 60.465 6.19e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1579 K10666 - gmx:100814783 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1579 11 14889744 14890433 Sto11g1579 11 14889744 14890433 ECH