Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1570 ATGAAGCGAAGACGACGTCGTAAGAGGAGCAAAGGAGGGGAAAGCGTGGGTGTGGGGATGAAGAAGAGGAAGCAGTTGAGCGAAGAGCAAGCGAAGCTTCTGGAACAACACTTCGGGAAAGAGCACAAGTTAGAGTCCGAAAGGAAGGACCGGCTCGCGTGCGAGTTGGGTCTGAACCCGCGTCAGGTGGCCGTGTGGTTTCAGAACCGAAGGGCTCGTTGGAAGAACCAGAAGCTCGAGCAAGCCTACACCGACCTCAAGAACCTTCACGAAACCACCCTCCTCGAGAAATGCCGCCTCCAGACCGAGGTGTCAAAGCTAAAGGAAGAGCTTTGGGAAGCAGAGAAGGAGATCCAACGGCTAATAGAGAGCGGAAAGAGAGTAGTGTCGAATGAACCCAAGAGCCCAAGTTGTTCATGGGAGTCAATGGTAAGTGTGGAGCCACCATTTCTTGGGGAGTTCGGATACGATGATGATATTGATGATGTCTTTGTATACACCACAGACCATTATATTTCGCAACGGCACAAACTCGACTTGGACTCGGATTCTGAGATCAAGAGCAAACTGATTCAGATTCTCTCTTATCAACTTACATTCCACGGCGTATTCCTCCGGCACAAACGCGGTGATTCGAAGGAGCGGCGCGTTGAGCTTACACGCCTCCGCCTTCTCGGCGATCTCCTTCATCAGCGAGGCGTACTGAATTCCCAGACCGATCTCGAAATCGATGACGTGCATGAAGGAAGATCCATGGAGGGCCTCGAGGAGTGCTTGGTTGGTGGTGAAGATGGAGAACATCGGGATGGGTGA 813 0.5215 MKRRRRRKRSKGGESVGVGMKKRKQLSEEQAKLLEQHFGKEHKLESERKDRLACELGLNPRQVAVWFQNRRARWKNQKLEQAYTDLKNLHETTLLEKCRLQTEVSKLKEELWEAEKEIQRLIESGKRVVSNEPKSPSCSWESMVSVEPPFLGEFGYDDDIDDVFVYTTDHYISQRHKLDLDSDSEIKSKLIQILSYQLTFHGVFLRHKRGDSKERRVELTRLRLLGDLLHQRGVLNSQTDLEIDDVHEGRSMEGLEECLVGGEDGEHRDG 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1570 270 Coils Coil 69 89 - -
Sto11g1570 270 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Sto11g1570 270 CDD homeodomain 21 78 IPR001356 GO:0003677
Sto11g1570 270 Gene3D - 13 84 - -
Sto11g1570 270 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Sto11g1570 270 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Sto11g1570 270 MobiDBLite consensus disorder prediction 12 26 - -
Sto11g1570 270 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Sto11g1570 270 Coils Coil 104 124 - -
Sto11g1570 270 MobiDBLite consensus disorder prediction 1 26 - -
Sto11g1570 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 2 173 - -
Sto11g1570 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 173 IPR045224 GO:0003700
Sto11g1570 270 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Sto11g1570 270 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Sto11g1570 270 SMART HOX_1 19 81 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1570 Sto-Chr11 14804204 14810194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1570 4 170 Homeobox Transcription Factor Family AT2G18550 52.000 7.09e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto11g1570 Homeodomain 5.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1570 K09338 - gmx:100809616 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3795 6 42599095 42600709 Sto11g1570 11 14804204 14810194 CCT
Sto11g1570 11 14804204 14810194 Sto11g1570 11 14804204 14810194 ECH