Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1566 ATGCCTGATTTCGAAGACGCATACGAAGGAAACGGGGGGGACGCTGAAAATTACGGTGACGGCTACTCCCCGAGACCTCGTCGTACAAGTCACGGTGCTCCTGATGGCGATTCCAAATCTCAAGTTGTTGTGCATTACATGAGGCACAGGCGATCTCGCTCACGATCAAAGGATAGATCTGAAGACAGGTCTAGGTCACGTTCAAAGAGCAAAAGGATTAGTGGTTTTGATATGGCTCCTCCTGCAATGTTAGCCAACCCAGCTGTTACTGAAGGCCAGTTTCCCGGGCCGAATCCTGCAGTTCCCAATATGTTTCAAAACATGTTTTCTATGGGTCAGCAGTTTGGTACTTCTGTTACACAACCTGTTCAGGCAATGACACAACAGGCTACTAGACATGCTAGGAGGGTATATGTTGGAGGACTTTCTCCTATTGCAAATGAACAGGTGTTGCTCATGATCTTGATCCTGTTGACCTTTCCGTCAAAGTCATTCAATTATGATATTGATAACCTTGAATGTGCCTTCATTTGTATTTCTGCTTTGTCAAGTTCCAGAAGTTATTCAACATTGTTAATATTTGCAGCAATCATCAATTTGTGCCCATTCCTCTGCTTTCATGCAACTGAGGCATTGATTTATGCTGAGGATATGCTTTTTTCTGTTGCAACTTTTTTCAGCCAGGTTATGGCTAAGATTGGAGGAAACACTGCTGGTCCTGGTGATGCTGTTGTTAATGTTTACATTAACCATGAAAAAAAGTTTGCGTTTGTGGAGATGAGATCTGTTGAGGAGGCTAGTAATGCAATGGCTTTAAATGGAATTGTATTTGAGGGGGCTCCTGTCAAGGTGAGAAGACCTAGTGACTACAATCCTTCTCTAGCTGCAGCTCTTGGTCCAAGCCAGCCTAACCCAAACCTCAACCTGGCTGCTGTAGGTTTGTCAACTGGCACTTCCAGTGGACTGGAGGGTCCTGATCGCATCTTTGTGGGTGGGCTGCCCTATTACTTTACTGAAGCACAGATTAGGGAGTTATTAGAAACTTTTGGTCCTCTTAAAGGTTTTGATCTGGTGAAAGACAGAGAAACAGGAAACTCAAAGGGCTATGCATTTTGTGTTTATCAAGATCTTGCAGTTACAGACATTGCTTGTACTGCACTGAATGGCATAAAAATGGGAGATAAAACTCTCACTGTTAGACGGGCTAGTCAAGGTGCTGTCCAACCTAAATCTGAGCAGGAGAATGTTTTAATCCATGCCCAGCAGCAGTTTGCTCTCCAGAGGCTCATGCTTCAACCTCCTGTGCTGCCCACAAAAGTGTTATGTTTAACTCAAGCAGTTTCCCCTGATGAGCTTAAAGATGATGACGACTATGAAGACATTCTTGATGACATGAGACAGGAGTGTGGAAAATTTGGTACTTTGGTCCATGTGGTCATCCCGCGTCCATTACCAAACGGGGAATCGTCTCCAGGTGTTGGAAAGGTATTTTTGGAGTATGCGGATGTTGAAGGTTCTACTAAGGCTCGTTCTGGTTTGAATGGAAGAAAATTTGGTGGAAATGAAGTGACGGCTGTCTTTTATCCTGAGAATCAATTTGCTCAAGGGGACTATGAAGGCTAG 1623 0.4418 MPDFEDAYEGNGGDAENYGDGYSPRPRRTSHGAPDGDSKSQVVVHYMRHRRSRSRSKDRSEDRSRSRSKSKRISGFDMAPPAMLANPAVTEGQFPGPNPAVPNMFQNMFSMGQQFGTSVTQPVQAMTQQATRHARRVYVGGLSPIANEQVLLMILILLTFPSKSFNYDIDNLECAFICISALSSSRSYSTLLIFAAIINLCPFLCFHATEALIYAEDMLFSVATFFSQVMAKIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALNGIVFEGAPVKVRRPSDYNPSLAAALGPSQPNPNLNLAAVGLSTGTSSGLEGPDRIFVGGLPYYFTEAQIRELLETFGPLKGFDLVKDRETGNSKGYAFCVYQDLAVTDIACTALNGIKMGDKTLTVRRASQGAVQPKSEQENVLIHAQQQFALQRLMLQPPVLPTKVLCLTQAVSPDELKDDDDYEDILDDMRQECGKFGTLVHVVIPRPLPNGESSPGVGKVFLEYADVEGSTKARSGLNGRKFGGNEVTAVFYPENQFAQGDYEG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1566 540 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 48 151 - -
Sto11g1566 540 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 221 539 - -
Sto11g1566 540 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 221 538 IPR006529 GO:0003723|GO:0005634|GO:0006397
Sto11g1566 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 463 523 IPR000504 GO:0003723
Sto11g1566 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 397 IPR000504 GO:0003723
Sto11g1566 540 SMART rrm2_1 440 526 IPR003954 GO:0003676
Sto11g1566 540 PANTHER RNA-BINDING PROTEIN 221 539 - -
Sto11g1566 540 PANTHER RNA-BINDING PROTEIN 48 151 - -
Sto11g1566 540 Gene3D - 130 302 IPR012677 -
Sto11g1566 540 SUPERFAMILY RNA-binding domain, RBD 244 291 IPR035979 GO:0003676
Sto11g1566 540 SUPERFAMILY RNA-binding domain, RBD 327 528 IPR035979 GO:0003676
Sto11g1566 540 SMART rrm1_1 327 400 IPR000504 GO:0003723
Sto11g1566 540 SMART rrm1_1 136 285 IPR000504 GO:0003723
Sto11g1566 540 SMART rrm1_1 440 526 IPR000504 GO:0003723
Sto11g1566 540 MobiDBLite consensus disorder prediction 1 77 - -
Sto11g1566 540 Gene3D - 434 539 IPR012677 -
Sto11g1566 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 404 IPR000504 GO:0003723
Sto11g1566 540 CDD RRM2_U2AF65 326 402 - -
Sto11g1566 540 CDD RRM3_U2AF65 438 526 - -
Sto11g1566 540 Gene3D - 315 418 IPR012677 -
Sto11g1566 540 MobiDBLite consensus disorder prediction 55 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1566 Sto-Chr11 14782896 14788716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1566 328 519 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 2.12e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1566 K12837 - jre:108997544 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1566 11 14782896 14788716 Sto11g1566 11 14782896 14788716 ECH