Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1546 ATGATGCCTGGTTGTAGTAGCTATGAAGGAGGGCACGTGATGGGAGCGTGCTCGTGTGGAATGTTTCATAGCCAAACCAATTCCTTCCCTATGCTATTCGGTAATTCTACCAACCAGTACAATCCCTATGATGATCACGAATATTCCGATATGTATAATTCCTTCACGCCCTCTTCGTCttccgtggattgcacgctctCCCTCGGAACCCCATCCACGCGTTTAACGGAGGACGAAGAGAAGCGCACTAGCAGTAGTCGCTCCTTGTGCTGGGATTTATTACGCTCCAAACACTCTCACACTAATAAATCTACACGaggctcctcctcctcctctactTCTTCCAATAATGACCCTCTTCTCGCCCGTCGTTGCGCCAATTGCGACACCACCTCCACACCTCTCTGGCGGAATGGTCCTAGGGGCCCAAAGATAACAGAGGGCTCGTCCATGACTTTACGAGATGATGAAGATTAA 477 0.4465 MMPGCSSYEGGHVMGACSCGMFHSQTNSFPMLFGNSTNQYNPYDDHEYSDMYNSFTPSSSSVDCTLSLGTPSTRLTEDEEKRTSSSRSLCWDLLRSKHSHTNKSTRGSSSSSTSSNNDPLLARRCANCDTTSTPLWRNGPRGPKITEGSSMTLRDDED 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1546 158 PANTHER GATA TRANSCRIPTION FACTOR 18 1 144 - -
Sto11g1546 158 MobiDBLite consensus disorder prediction 103 137 - -
Sto11g1546 158 PANTHER GATA TRANSCRIPTION FACTOR 18 1 144 IPR044272 GO:0003700|GO:0009908
Sto11g1546 158 ProSiteProfiles GATA-type zinc finger domain profile. 119 154 IPR000679 GO:0006355|GO:0043565
Sto11g1546 158 MobiDBLite consensus disorder prediction 57 87 - -
Sto11g1546 158 MobiDBLite consensus disorder prediction 99 158 - -
Sto11g1546 158 MobiDBLite consensus disorder prediction 57 73 - -
Sto11g1546 158 Pfam GATA zinc finger 125 144 IPR000679 GO:0006355|GO:0043565
Sto11g1546 158 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 143 - -
Sto11g1546 158 SMART GATA_3 119 158 IPR000679 GO:0006355|GO:0043565
Sto11g1546 158 Gene3D - 121 147 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1546 Sto-Chr11 14635819 14636604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1546 18 144 C2C2-Gata Transcription Factor Family AT3G50870 43.293 4.34e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto11g1546 GATA 1.5e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1546 - - jre:108997534 173.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3832 6 42855439 42856214 Sto11g1546 11 14635819 14636604 CCT
Sto11g1546 11 14635819 14636604 Sto6g3985 6 43764847 43775157 CCT
Sto11g1546 11 14635819 14636604 Sto11g1546 11 14635819 14636604 ECH