Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1544 ATGGAAAGTACTACTCACAATTATTATAATCgggattcttcttcttcttctttagatcatcatcatcatattaatCCCGCGAGAAGAGAGGGAGATCCAGATGGCAGCACGAGAGTGGCGGGAGTTAGGTACAGAGAATGTATGAAGAATCACGCGGCGAGCACGGGGAGTCACGTGGTGGATGGGTGCGGAGAGTTCATGCCAAGCGGACAAGAAGGCACTGTGGAATCTTTCACATGTGCCGCTTGTAACTGCCACAGAAATTTTCACCGAAAACACCCTCATCATCCACAACcacatcttcttcctctttccaattattattataattctcTTCATCGTCATCGTCATCATCAACATCCCACATTTATTCCTCCGTTGATGGTGGCCTTGGGAGGCGGCCGCGAGGATCTCGACGTGTTTCGGTCTAATACCGCCGGATCAGAGCAGCCAAAGAAGAGGTTTCGGACCAAGTTCACGGAGGAGCAAAAGGAGAAGATGATGGAATTTGCAGACAAGTTGGGGTGGAAGATCCAGAAACATCATGACCAAGAATTACGCCAATTCTGTTCGCAGGTAGGTGTCAAAAGGAAGGTCTTCAAGGTCTGGATGCACAACAATAAGCAAGCTAAGAAGCAACAACAAGTGTAA 651 0.4286 MESTTHNYYNRDSSSSSLDHHHHINPARREGDPDGSTRVAGVRYRECMKNHAASTGSHVVDGCGEFMPSGQEGTVESFTCAACNCHRNFHRKHPHHPQPHLLPLSNYYYNSLHRHRHHQHPTFIPPLMVALGGGREDLDVFRSNTAGSEQPKKRFRTKFTEEQKEKMMEFADKLGWKIQKHHDQELRQFCSQVGVKRKVFKVWMHNNKQAKKQQQV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1544 216 SUPERFAMILY Homeodomain-like 143 213 IPR009057 -
Sto11g1544 216 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 44 93 IPR006456 -
Sto11g1544 216 Gene3D - 140 213 - -
Sto11g1544 216 Pfam ZF-HD protein dimerisation region 42 93 IPR006456 -
Sto11g1544 216 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 43 93 IPR006456 -
Sto11g1544 216 MobiDBLite consensus disorder prediction 15 36 - -
Sto11g1544 216 MobiDBLite consensus disorder prediction 1 38 - -
Sto11g1544 216 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 214 - -
Sto11g1544 216 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 152 209 IPR006455 -
Sto11g1544 216 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 30 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1544 Sto-Chr11 14612134 14612784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1544 36 216 ZF-HD Transcription Factor Family AT2G18350 50.251 2.06e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto11g1544 ZF-HD_dimer 8.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1544 - - gmx:100776691 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3836 6 42888121 42891848 Sto11g1544 11 14612134 14612784 CCT
Sto11g1544 11 14612134 14612784 Sto11g1544 11 14612134 14612784 ECH
Sto6g3836 6 42888121 42891848 Sto11g1544 11 14612134 14612784 ECH