Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1540 ATGGATAAAGCCAAACTTCTACTGCAGTATTGCTGCGAGTCTAGTAAACTCTACCTGATTTCTCAAATAATCGACATTCTTGCTTGCGCAACATTTGTCCTGGATTCAGCTGAAGAAGAGGCTGGGAGGGTTGTGAGAGAACTGCTCCAGCAAGGTGGTTCAACCTCAGATTCTATGGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCAGCAGCAAAACTTTATATCACTTCCCCAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCTGGATAAAGTTGGTCCAAATGACCAGACAAAAAAGATGATCTTGAGATATCTTTTGTATCTATTGAAAAAGTATGGAAATTACGTTGTGGGAGAACAGACGCAAAAGGTATATGCTTATAGTGAAGGACCAAATGCAACTGAGAACTACAGTCATGATTCTCTAAATTCTCAATATGTTGAACCAGACCGATGCTTGAATTATGATCAAAATAGTACTCAAAATAGTGACTTGGGTAAAGCGATGCTGCCCGAGGAATATAAGTGCCCAATATCTTCAAGATTAATGTATGATCCTGTTGTTATTGCTTCTGGAGTAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGCAATGATATATGTCCAAAATCTAGAAAGAAACTGGTCCATATGTCTTTGACACCCAACATTGCTATGAAGGACATAATATCAAAGTGGTGCAGAAATAACGGAGTCACTATTCCTGACCCAAGTCAGCAAGCAGAATATTTTCACTTGTTGGAGGCTTCCTCCACTTCAATTAGGAGCTTTGGCAGTTCTATGAATGATTTCCACTTGCCAGTGGATCTTAGTAGCATTTCTATTGGATCATTGGACACCAGTTATAGTTCTGATACCTCTCATCCTAGGAGTACTCATGGCTCGCGTTTGGTGATGATGAAGACCAATGACAATTCTCACAGTCATCAACTGAATGTGCATGTGCATGACACAGATCTGAAAATTTTGTCTGAACTCTCTGATCTTGAATGGGATTCTCAGTACCAAGTCATTGAAGATATGAAAAATCGTTTGAAATGCAATTGCGAAGTTTCTTGTTCTGTCTCTTCTCAGAATTTCATTGAACCTCTCAACAGATTTCTGAGCAATGCGTATGAACTTCATGATGTGAAGGCTTTGAGAGCTGGATCTCAGTTGTTGAAGGAATTTGTGATGAACTATGGGGCTACAAAAATGGCCGCAGAATCATCGgagggagaagaagaagcagggAAGCTCACCGGAGGGAACCAACTCTTGGTCGTTGATGATGACCTCAGAGAGATGGGCAAGAAGGCTGCTTGGAGTGTCAGCTCCTTCAAGCCTGGCAATGGAGTTTCTTCTCTTCGCGATAACAACCTTGAAACCTATTGGCAATCTGATGGAGCTCAGCCTCATTTGGTCAATATTCAATTTCAAAAGAAGGTCAAGCTACAATTAGTTGTTCTTTATGTGGATTTCAAGCTCGATGAGAGTTATACACCAAGCAAAATTTCTATACGGGCTGGTGATGGTTTTCATAACTTAAAGGAGATAAAAACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTATCTATCATTATCTGGAATTGATCCTCGGGAAACTTTTGTCAACACTTTTATGTTGCAAGTTGCTGTGTTGTCAAATCATCTCAATGGAAGGGATACTCATGTGCGGCAGATCAAAGTTTATGGACCTCGACCAAGACACATTATGAGATGGATCAACAGCGGCCACAAGCTGGAAGTTCTTAACAGAAGCCACTGTGACGCGGCCCTTGAAGTTCAGGCACCAGCATTGCAGCTGCTCATGCCATCTGGGAGCCTTGTTTTTCAGAACAAGAGGCTCAAATTAAAAAACTTCACATCTAGCTAG 1923 0.4025 MDKAKLLLQYCCESSKLYLISQIIDILACATFVLDSAEEEAGRVVRELLQQGGSTSDSMENSEIKALQFAAAKLYITSPKAILIEKRSIKKLLDKVGPNDQTKKMILRYLLYLLKKYGNYVVGEQTQKVYAYSEGPNATENYSHDSLNSQYVEPDRCLNYDQNSTQNSDLGKAMLPEEYKCPISSRLMYDPVVIASGVTYERMWIQKWFDEGNDICPKSRKKLVHMSLTPNIAMKDIISKWCRNNGVTIPDPSQQAEYFHLLEASSTSIRSFGSSMNDFHLPVDLSSISIGSLDTSYSSDTSHPRSTHGSRLVMMKTNDNSHSHQLNVHVHDTDLKILSELSDLEWDSQYQVIEDMKNRLKCNCEVSCSVSSQNFIEPLNRFLSNAYELHDVKALRAGSQLLKEFVMNYGATKMAAESSEGEEEAGKLTGGNQLLVVDDDLREMGKKAAWSVSSFKPGNGVSSLRDNNLETYWQSDGAQPHLVNIQFQKKVKLQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGIDPRETFVNTFMLQVAVLSNHLNGRDTHVRQIKVYGPRPRHIMRWINSGHKLEVLNRSHCDAALEVQAPALQLLMPSGSLVFQNKRLKLKNFTSS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1540 640 Pfam U-box domain 176 245 IPR003613 GO:0004842|GO:0016567
Sto11g1540 640 CDD RING-Ubox_PUB 179 221 IPR045210 -
Sto11g1540 640 ProSiteProfiles DOC domain profile. 420 606 IPR004939 -
Sto11g1540 640 SUPERFAMILY Galactose-binding domain-like 412 582 IPR008979 -
Sto11g1540 640 Pfam Anaphase-promoting complex, subunit 10 (APC10) 426 586 IPR004939 -
Sto11g1540 640 CDD APC10 442 581 IPR016901 GO:0005680|GO:0031145
Sto11g1540 640 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 414 - -
Sto11g1540 640 PANTHER U BOX DOMAIN-CONTAINING 20 414 - -
Sto11g1540 640 SUPERFAMILY RING/U-box 165 251 - -
Sto11g1540 640 Gene3D - 399 583 - -
Sto11g1540 640 SMART APC10_2 441 610 IPR004939 -
Sto11g1540 640 SMART Ubox_2 178 241 IPR003613 GO:0004842|GO:0016567
Sto11g1540 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 249 IPR013083 -
Sto11g1540 640 ProSiteProfiles U-box domain profile. 174 248 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1540 Sto-Chr11 14573838 14588260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1540 1 413 U-box Gene Family AT1G67530 30.687 9.10e-49 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1540 - - gmx:100791627 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3842 6 42925011 42928357 Sto11g1540 11 14573838 14588260 CCT
Sto11g1540 11 14573838 14588260 Sto11g1540 11 14573838 14588260 ECH