Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1511 ATGGACTCCCAAACTGCCTTCAAAGCCAGCTTCACAAAAGACACCACCTTCAATTTCAACCCCCATGCCTTCCTTGACGAGTTATCCACTTTAAACCTCCAAAATGCTACACCTTCTGACGACTTCTTCGTTGAAGAGCTCCTTGATTTCTCCCACCACCAACAAGaacaagaggaagaagaagacgaacCTAAGAACAAGAACGACTCTGTTTCTGTCTCTCTTTCCCCTCAACAAACGACCCAAAGCCGCCATTTTTGTAACCTTCCCTCCACTTTTTCTCTCAAAGACGACTTTGTGTCCACCGAACTCACCGTTCCGGCCGAAGACGAAGCAGACTTAGAGTGGTTGTCTCATTTTGTGGAAGACTCCTTCTTGGAACACCCTTCTGCGTACCCCACCGGAACTACTTCATCGGACAAACCTCAAAATGGGTTTCGACCCCAAACCCCTGTTTCGACCCGACAGCCCTGTTTTGAAGCTCCGGTTCCGGCCAAGGCCAGAAGCAAACGCACGAGGTCCGGCGTTCGTGTGTGGCCACTGGGCTCTCCTTCCTTCACCGACTCGTCATCTTCGAACTCCTCGTCTTCCTCCTCTCCGTCGTCTCCGTGCCTGATTTACACCGGCTTAACCCAAAATCTCGAGCCGGTGAGCTCGCCGGCGGCGAAAAAATGGAAGAGGAGGACAGCGGCGGAGGCGGCAGCTACGGCACCGCGAAGGTGTAGCCATTGTGGCGTGCAGAAGACCCCGCAGTGGCGGACGGGTCCACTCGGGGCGAAAACTCTGTGTAACGCGTGTGGTGTCCGATTCAAGTCGGGTCGGCTCTTACCCGAGTACAGACCCGCTTGTAGCCCCACATTCTCCAGCGAATTACACTCGAACCACCACCGGAAAGTGCTGGAGATGCGGCGGAAGAAGGAGGTCGGAGGTGCAATTGGGTTGGGTTCGGATCATTTCCCGGTTGTCCCCAGTTTTTGA 978 0.5307 MDSQTAFKASFTKDTTFNFNPHAFLDELSTLNLQNATPSDDFFVEELLDFSHHQQEQEEEEDEPKNKNDSVSVSLSPQQTTQSRHFCNLPSTFSLKDDFVSTELTVPAEDEADLEWLSHFVEDSFLEHPSAYPTGTTSSDKPQNGFRPQTPVSTRQPCFEAPVPAKARSKRTRSGVRVWPLGSPSFTDSSSSNSSSSSSPSSPCLIYTGLTQNLEPVSSPAAKKWKRRTAAEAAATAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVGGAIGLGSDHFPVVPSF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1511 325 MobiDBLite consensus disorder prediction 53 82 - -
Sto11g1511 325 Pfam GATA zinc finger 241 275 IPR000679 GO:0006355|GO:0043565
Sto11g1511 325 PANTHER GATA TRANSCRIPTION FACTOR 1 308 - -
Sto11g1511 325 MobiDBLite consensus disorder prediction 53 68 - -
Sto11g1511 325 MobiDBLite consensus disorder prediction 128 201 - -
Sto11g1511 325 CDD ZnF_GATA 241 288 IPR000679 GO:0006355|GO:0043565
Sto11g1511 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
Sto11g1511 325 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Sto11g1511 325 PANTHER GATA TRANSCRIPTION FACTOR 1 308 - -
Sto11g1511 325 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Sto11g1511 325 SMART GATA_3 235 289 IPR000679 GO:0006355|GO:0043565
Sto11g1511 325 MobiDBLite consensus disorder prediction 130 156 - -
Sto11g1511 325 Gene3D - 231 307 IPR013088 GO:0006355|GO:0008270
Sto11g1511 325 MobiDBLite consensus disorder prediction 183 201 - -
Sto11g1511 325 PIRSF Txn_fac_GATA_plant 4 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1511 Sto-Chr11 14323435 14324523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1511 4 307 C2C2-Gata Transcription Factor Family AT5G66320 47.904 1.80e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto11g1511 GATA 4.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1511 - - aprc:113869559 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3895 6 43218618 43223576 Sto11g1511 11 14323435 14324523 CCT
Sto6g3895 6 43218618 43223576 Sto11g1511 11 14323435 14324523 ECH
Sto11g1511 11 14323435 14324523 Sto11g1511 11 14323435 14324523 ECH