Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1504 ATGAGAACACTTTGTGACGCCTGTGAGAGCGCCGCCGCCATCGTTTTCTGCGCCGCCGATGAGGCTGCTCTCTGCCGTGCCTGCGATGAGAAGGTTCACATGTGTAATAAACTAGCTAGCCGCCATGTAAGAGTTGGTCTTGCAAGTCCAAGTGACATTCCACGATGTGATATATGTGAAAATGCACCTGCTTTCTTCTATTGCGAGACAGATGGAAGTTCTCTTTGTTTGCAGTGTGATATGATGGTTCATGTAGGAGGAGATAAATATTGTGTTGTAGAAAACACAGCAATACAATCTTTGGAAGCAGATGAGAGTAAAAGAGGACAAAACTCAGTGTCCAAAGTGAAAATGGGAGAGAAACAACAAAATCATCGGATGGCTATGGTTGCAACACCAGAAGAACCTGAGGCTGATGGCCATGCTCAAATGGAAACTAATATGATTGATTTGAACATAAAGCCTCAAAGAATACATGAGCAAACTGCTAATAATCAGGTTAGATTGTCTCAATTTTGTcagattaattag 531 0.4181 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDIPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGDKYCVVENTAIQSLEADESKRGQNSVSKVKMGEKQQNHRMAMVATPEEPEADGHAQMETNMIDLNIKPQRIHEQTANNQVRLSQFCQIN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1504 176 CDD Bbox1_BBX-like 4 47 - -
Sto11g1504 176 PANTHER B-BOX ZINC FINGER PROTEIN 22 87 166 - -
Sto11g1504 176 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 88 - -
Sto11g1504 176 MobiDBLite consensus disorder prediction 104 125 - -
Sto11g1504 176 Pfam B-box zinc finger 54 85 IPR000315 GO:0008270
Sto11g1504 176 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Sto11g1504 176 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sto11g1504 176 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Sto11g1504 176 Gene3D Classic Zinc Finger 2 89 - -
Sto11g1504 176 MobiDBLite consensus disorder prediction 104 118 - -
Sto11g1504 176 SMART bboxneu5 51 93 IPR000315 GO:0008270
Sto11g1504 176 SMART bboxneu5 1 47 IPR000315 GO:0008270
Sto11g1504 176 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 88 - -
Sto11g1504 176 PANTHER SALT TOLERANCE-LIKE PROTEIN 87 166 - -
Sto11g1504 176 ProSiteProfiles Zinc finger B-box type profile. 51 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1504 Sto-Chr11 14256976 14257831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1504 1 166 C2C2-CO-like Transcription Factor Family AT4G38960 60.843 2.20e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Sto11g1504 zf-B_box 8.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1504 - - gmx:100780544 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3906 6 43285777 43286751 Sto11g1504 11 14256976 14257831 CCT
Sto6g3906 6 43285777 43286751 Sto11g1504 11 14256976 14257831 ECH
Sto11g1504 11 14256976 14257831 Sto11g1504 11 14256976 14257831 ECH
Sto2g0788 2 6756038 6758598 Sto11g1504 11 14256976 14257831 ECH