Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1470 ATGGCGGAGGAGAGATTCACAGGAGTGGTTCAATGGTTCAACGATTCAAAGGGCTTTGGCTTTATCAAGCCTGACGATGGAGGCGAAGATCTCTTCGTTCACCAATCTTCCATCAGATCCAACGGCTATCGTAGTCTCCTCGAAGGAGATCATGTCGAATTCTCTATTGCTACAGGCGATCAGGACAAAACCAAAGCCGTTGATGTCACTGGCCCCAATGGAGCCCCTCTAAACTCGAAGAAAGATAACTACGGTGCCCGCGGCGGCGGATTTGGTTTCGGCGGTGGACGGAGAGCCGGAGATAGGCGCAACGGAGGCGCTGGCTGCTATCAATGCGGCGATCTAGGGCATTTGGCCAGGGATTGCGATCGGGGCAACAATgccggcggcggcggtggttgTTATAATTGCGGTGAAGTAGGGCATCTGGCAAGGGATTGCTCGCGTGGAAGCAACACCGGCGGTGGAGGCGGAGGGAGTGGATCTTGCTTTAGGTGTGGTGAGTATGGGCACATGGCGAGGGATTGCAGCAGCAAGGGAAGAAACCTTGGAGGCGGAGGCGGTGGCGGTGGAGGTTGCTTTAGATGTGGAGAAGTAGGGCATTTGGCTAGGGATTGCAGCAAAGAAAGCGGAAACTATGGAAGTAGTGATGGTGGTAGGGGTAATGTGAGCAAAAGCACTTGCTTTAATTGTGGGAAACCTGGGCACTTTGTGCGAGAGTGCCTTGAAGACTCTGGTTGA 741 0.5182 MAEERFTGVVQWFNDSKGFGFIKPDDGGEDLFVHQSSIRSNGYRSLLEGDHVEFSIATGDQDKTKAVDVTGPNGAPLNSKKDNYGARGGGFGFGGGRRAGDRRNGGAGCYQCGDLGHLARDCDRGNNAGGGGGCYNCGEVGHLARDCSRGSNTGGGGGGSGSCFRCGEYGHMARDCSSKGRNLGGGGGGGGGCFRCGEVGHLARDCSKESGNYGSSDGGRGNVSKSTCFNCGKPGHFVRECLEDSG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1470 246 Gene3D - 1 83 IPR012340 -
Sto11g1470 246 ProSiteProfiles Zinc finger CCHC-type profile. 134 147 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 ProSiteProfiles Zinc finger CCHC-type profile. 193 208 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 SMART c2hcfinal6 108 124 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 SMART c2hcfinal6 227 243 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 Gene3D - 95 154 - -
Sto11g1470 246 SUPERFAMILY Retrovirus zinc finger-like domains 155 209 IPR036875 GO:0003676|GO:0008270
Sto11g1470 246 SUPERFAMILY Retrovirus zinc finger-like domains 210 241 IPR036875 GO:0003676|GO:0008270
Sto11g1470 246 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Sto11g1470 246 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Sto11g1470 246 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Sto11g1470 246 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Sto11g1470 246 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 1 183 - -
Sto11g1470 246 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 127 243 - -
Sto11g1470 246 Pfam Zinc knuckle 108 123 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 Pfam Zinc knuckle 227 241 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 Pfam Zinc knuckle 133 148 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 Pfam Zinc knuckle 192 208 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 Pfam Zinc knuckle 162 177 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Sto11g1470 246 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Sto11g1470 246 ProSiteProfiles Zinc finger CCHC-type profile. 109 122 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 SUPERFAMILY Retrovirus zinc finger-like domains 102 150 IPR036875 GO:0003676|GO:0008270
Sto11g1470 246 SMART csp_8 7 72 IPR011129 GO:0003676
Sto11g1470 246 Gene3D - 217 246 - -
Sto11g1470 246 Gene3D - 189 214 - -
Sto11g1470 246 Gene3D - 155 184 - -
Sto11g1470 246 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Sto11g1470 246 PANTHER COLD SHOCK DOMAIN PROTEIN 2 127 243 - -
Sto11g1470 246 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 183 - -
Sto11g1470 246 ProSiteProfiles Zinc finger CCHC-type profile. 163 176 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 ProSiteProfiles Zinc finger CCHC-type profile. 228 241 IPR001878 GO:0003676|GO:0008270
Sto11g1470 246 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1470 Sto-Chr11 13951801 13952541 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Sto11g1470 CSD 2.6e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1470 K09250 - gmx:106796585 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1470 11 13951801 13952541 Sto11g1470 11 13951801 13952541 ECH