Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1463 ATGGGTACCAATTTCAGACATGTGTTTTATACATTGTGGGGTGTTTCTACTTCTTGGAAGAAAAGAAGCACACCACATGTTCGAAGAATTTCCCACAGAGATGTGGAGAAAGAAGAGTTCCAGTATGCTAGTACTCGGTGTCTCTCATCTTATTACAGTGTGTTTGTGGTTCGTCTAGCTATTATGGTCATGCTAGCCATCTTGATTGGGCTGCTCACTTTACTAACATGGCATTTCACAAAGATTTATACTAAAAAATCACTTAACAGCTTAGCCTATGGCCTACGTTATGAACTTCTCCAACGTCCCATCTTAAGGATGTGGAATATTTTGAACACTACAGCTGAAATTACAGCAGCTCAAGTGAAGCTGTCCCAGTATGTAATCAGACGGTACAACAATCCTGCCTCTCAAGCAGAAGAAGTAGAGTTATATGAAGCAATGAGGGCTGTGACATGGGCATTGTTTGCTAGCAACAAAGCTCTCAATTCAATAACTATCAATTACAGAAATGGGTTTGTCCAGGCATTCCatagggatgtaaagggtaacaacacattttatatatactctGATCTTGCAAATTACTCCATAGCTGCTAGTCTACTCTCAACTCATCAAGCTTGGAATGATAACACCATTCTTGGAAACCATTCTGCTATTTGGTATCGCGAACCACTCGATCCTCTCAGTGGAGAGAAGATTGGGAAAGCTAAGCAAATAGCACCAGAAGACTTGATCAATATTGCTGGCATTTCCCAAGTTCCTGATGGTATTGCTTCGTGGCACGTGGCTGTGAGCAAGTTCACAGATTCGCCTTTGCTTTCAGCAGCACTTCCAGTTTTGGATTCTTCTAACAAGAGCATTGTGGCTGTTGTGGGTGTCACTACTGCTCTTTATAGTGTAGGCCAGCTGATGAAAGAATTAGTTGAGTTTCATAGTGGTCACATGTACTTGACTTCACAAGAAGGTTACTTACTTGCCACTTCCACTAATGAACCTTTGCTTATAAATTCAACAAAATCTCCCAAGCTCAAGATGGCTGTTGATTGTAAAGACGATGTGATACGACTCGGAGCCGAGTGGTTAGGGAGAACTTATGGAAACAAGTTTCCTCCAAGTCATGAGGTTCATATTGAGGATGCCTGGTTAGGTCACCAGCAATATTACATTGATTCTTTCTTCCTCAAGTTGAAGAGACTTCCTCTGGTGGGTGTTATCATTATCCCAAGAAAGTATATCATGGGAAAGGTGGATGAAAGAGCCTTCAAAACGTTGGTTATTCTCATATCAGCATCCTTGTGTATATTGTTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGGGTATCAAAGGAAATGAAACTAAGAGCAGAACTTATCCGTCAACTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAGTTTCTTGCAAATATGagTCATGAACTGAGGACTCCTATGGCAGCAGTGATTGGTTTGCTTGACATTCTTATATCCGATGATTGTCTCACAAATGAACAATATTCAGCAGTTACTCAAATAAGAAAATGCTCAACTGCACTACTCCGTCTCCTTAACAACATTTTGGATCTGAGCAAGGTGGAATCTGGAAAATTGGTGCTAGAAGATGAAGAGTTTGACTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTGTCTGACGATATGCCTAAGGTAGTTCGAGGTGACTCGGCTAGGGTAGTTCAGATTTTTGCaaatttgatcaacaattccaTAAAGTTCACTCCAAAGGGTCACATTATTCTAAGAGGGTGGTGTGAGAGTGCAAATTCTTGCAGTGATGACGCAAATTTTCCTCTTGATCAGAAGAAACCGTGGATGGGACAGAAGAGTAGAGTGAGGCAACATGAAGGCCACCCAAAGAAGACATCCAAGAAAGATAACAAAATGATTCTTTGGTTTGAGGTTGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGACCCCTCAACTACTAGATTGCATGGAGGCACTGGTCTTGGACTCTGCATTGTCAGGACCTTGATTAATAAGATGGGTGGAGAAATCAAGGTAGTCAAGAAAGAAGGCCAAGGAACTCTGATGCGATTATATCTTCTCCTCAGTGCACCCATGGATGCCACTGAACAACATTGTCGTTTAGATTATGCAGACAGCAACTTAGTGGTGTTGCTTGCATTACCAGACAACATGGGTCGTTTTATCACATCCAAATGGTTAGAGAAAAATGGGGTTTGCACTACAGAGGCATCTGACTGGAATGTACTAACACAAACCCTACGAGAACTCTTTCAAGCAAGAAGTTCAGTTCATAACAATTGCTTTGATGCACAACAAAATTACAGAGTAAATGAGGGTTTGAAGTCTAAATTGCTCAACATACAAGAGATGAAGAACCCAACTTTTGTCATTCTGGTTGACATAGGACTACTTGACTTGAGCACAGATATATGGAAGGAACAGCTTAACTTCCTTTACAAGTACTTTGGAAGAGCCAAGTTTGCATGGTTGCTAAATCATGACACTTCCAATAGCATAAAGATGGAACTCCGTGGAAAAGGCCATATGCTGATGATCAACAAACCACTTTACAAGGCAAAAATGGTTCATATTTTGGAAGCAGTCATAAAAGAGAGGAACCTTGAGCTGCAAAAGAAGATTATCACTACGAAAGAGGGCGGTGATGTGCACGAGTTTCTTGAAATTGATTCTACTAATTTTGATGCTTCTAGCTCTGACAGTACTTCTGACATATCTGAAATGGGTATTTCCAAATCTAATCCTAAtgacaaagaaagaaaatgtgtTGCAAAATCACTTTCTTCATCAAAGAACCAGATAAAGAACTGCTTAGTTGggttaaccgatgagtgtttggaagaTAATAGCAATTCAAGGAATGAAGAGTCATGTCAGAGCAGCCCCAACTCTCATGAAGCCATTGAAGATGCAGAACCAAAAGTAGAACTAGAATCCACTAAAGAAGTATCATTTCCAAGAGAAGCAGCTCAAGGGGAAGAAGATTCTGAATGTGGAGAAACACAGAAAGTTTGGAGCTCAAGTAATGCAGTCAATGGAAAGAAATCTCTTGAAGGGCTGAGGATATTGCTTGCAGAAGACACTCCAGTGCTTCAAAGGGTTGCTACCATAATGCTTGAGAAAATGGGAGCTACAGTTGCTGCAGTAGGTGATGGACAACAAGCAGTGAATGCTCTGAACTGTGTGCTTAGTGCAGAAGATTGTAGAAAGGAGTCTCTTCTGAAGGAGAGGAACACTAAATCTCAAACAGAAAATCTCACTCGCCCTCCATATGACTTGATTCTAATGGATTGTCAGATGCCAAGGATGGATGGTTATGAAGCAACAAAGGCAATAAGGAGATCAGAAGAGGGAACAGGAATGCACATTCCTATAGTAGCACTTACAGCACATGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTGGGAATGGATGCTTATTTAACAAAGCCGATAGACTTCAAGCTCATGGTCTCTACCATTCTTTCTCTCACTAAAACACCTTCCTCACTTCTcacttcatcatcatccccaAGCTAA 3699 0.3969 MGTNFRHVFYTLWGVSTSWKKRSTPHVRRISHRDVEKEEFQYASTRCLSSYYSVFVVRLAIMVMLAILIGLLTLLTWHFTKIYTKKSLNSLAYGLRYELLQRPILRMWNILNTTAEITAAQVKLSQYVIRRYNNPASQAEEVELYEAMRAVTWALFASNKALNSITINYRNGFVQAFHRDVKGNNTFYIYSDLANYSIAASLLSTHQAWNDNTILGNHSAIWYREPLDPLSGEKIGKAKQIAPEDLINIAGISQVPDGIASWHVAVSKFTDSPLLSAALPVLDSSNKSIVAVVGVTTALYSVGQLMKELVEFHSGHMYLTSQEGYLLATSTNEPLLINSTKSPKLKMAVDCKDDVIRLGAEWLGRTYGNKFPPSHEVHIEDAWLGHQQYYIDSFFLKLKRLPLVGVIIIPRKYIMGKVDERAFKTLVILISASLCILFIGCVCILILTNGVSKEMKLRAELIRQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSAVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDEEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPKGHIILRGWCESANSCSDDANFPLDQKKPWMGQKSRVRQHEGHPKKTSKKDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLINKMGGEIKVVKKEGQGTLMRLYLLLSAPMDATEQHCRLDYADSNLVVLLALPDNMGRFITSKWLEKNGVCTTEASDWNVLTQTLRELFQARSSVHNNCFDAQQNYRVNEGLKSKLLNIQEMKNPTFVILVDIGLLDLSTDIWKEQLNFLYKYFGRAKFAWLLNHDTSNSIKMELRGKGHMLMINKPLYKAKMVHILEAVIKERNLELQKKIITTKEGGDVHEFLEIDSTNFDASSSDSTSDISEMGISKSNPNDKERKCVAKSLSSSKNQIKNCLVGLTDECLEDNSNSRNEESCQSSPNSHEAIEDAEPKVELESTKEVSFPREAAQGEEDSECGETQKVWSSSNAVNGKKSLEGLRILLAEDTPVLQRVATIMLEKMGATVAAVGDGQQAVNALNCVLSAEDCRKESLLKERNTKSQTENLTRPPYDLILMDCQMPRMDGYEATKAIRRSEEGTGMHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDFKLMVSTILSLTKTPSSLLTSSSSPS 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1463 1232 MobiDBLite consensus disorder prediction 636 660 - -
Sto11g1463 1232 Pfam His Kinase A (phospho-acceptor) domain 478 543 IPR003661 GO:0000155|GO:0007165
Sto11g1463 1232 MobiDBLite consensus disorder prediction 642 660 - -
Sto11g1463 1232 MobiDBLite consensus disorder prediction 947 976 - -
Sto11g1463 1232 ProSiteProfiles Histidine kinase domain profile. 484 742 IPR005467 -
Sto11g1463 1232 MobiDBLite consensus disorder prediction 1004 1018 - -
Sto11g1463 1232 SMART HKATPase_4 590 742 IPR003594 -
Sto11g1463 1232 ProSiteProfiles Response regulatory domain profile. 1073 1218 IPR001789 GO:0000160
Sto11g1463 1232 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 465 544 IPR036097 GO:0000155|GO:0007165
Sto11g1463 1232 Gene3D - 465 544 - -
Sto11g1463 1232 MobiDBLite consensus disorder prediction 947 964 - -
Sto11g1463 1232 Pfam Response regulator receiver domain 1074 1213 IPR001789 GO:0000160
Sto11g1463 1232 Gene3D - 545 743 IPR036890 -
Sto11g1463 1232 Gene3D - 1052 1219 - -
Sto11g1463 1232 PRINTS Bacterial sensor protein C-terminal signature 667 681 IPR004358 GO:0016310|GO:0016772
Sto11g1463 1232 PRINTS Bacterial sensor protein C-terminal signature 685 695 IPR004358 GO:0016310|GO:0016772
Sto11g1463 1232 PRINTS Bacterial sensor protein C-terminal signature 702 720 IPR004358 GO:0016310|GO:0016772
Sto11g1463 1232 PRINTS Bacterial sensor protein C-terminal signature 726 739 IPR004358 GO:0016310|GO:0016772
Sto11g1463 1232 MobiDBLite consensus disorder prediction 1019 1052 - -
Sto11g1463 1232 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1219 - -
Sto11g1463 1232 CDD HisKA 478 539 IPR003661 GO:0000155|GO:0007165
Sto11g1463 1232 CDD REC_hyHK_CKI1_RcsC-like 1074 1214 - -
Sto11g1463 1232 SMART HisKA_10 477 543 IPR003661 GO:0000155|GO:0007165
Sto11g1463 1232 MobiDBLite consensus disorder prediction 1001 1057 - -
Sto11g1463 1232 SUPERFAMILY CheY-like 1070 1219 IPR011006 -
Sto11g1463 1232 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1219 - -
Sto11g1463 1232 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 532 738 IPR036890 -
Sto11g1463 1232 SMART REC_2 1072 1214 IPR001789 GO:0000160
Sto11g1463 1232 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 590 740 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1463 Sto-Chr11 13883443 13891196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1463 5 1230 Histidine Kinase Gene Family AT2G17820 65.319 0.0 1588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto11g1463 HATPase_c 3.5e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1463 - - gmx:100814068 1848.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3944 6 43536602 43542968 Sto11g1463 11 13883443 13891196 CCT
Sto11g1463 11 13883443 13891196 Sto11g1463 11 13883443 13891196 ECH