Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1439 ATGGAATTTGTGGCCAATCCATGCCCTTCTTCCTCTTTGGTGGCTTCGTTCGGCAATTTCGTCGAACGGGTTAAGCAAATTAGCGGTCTCGCGGTTTCTGCCATAATTGGGAACATCTTCTCTGCAATCTTCACCTTCTGCTTTGCCGTAGTGGGAACTTTGTTGGGTGCTATGACTGGAGCTTTGATAGGACAAGAAACAGAGAGTGGCTTCATTCGAGGAGCTGCTGTAGGAGCCATATCAGGAGCTGTGTTTTccattgaagtatttgaatctTCTCTTGTTCTCTGGAAATCTGATGAATCTGGAATTGGGTGCCTCTTATACTTGATTGATGTTATTGCTAGTCTTCTGAGTGGGAGACTTGTTCGTGAGAGGATAGGTCCAGCCATGTTAAGTGCCGTCCAAAGTCAGGTAATTCTTGCTTTTACAAGTTACACATTTTTTCATCAGATGGGTGCTGTTGAAGCAAGCTTTGATGAAATTCAAAACCTCTTTGACACTGGTGATGCAAAGGGTTTATCAGGAGATTATGTTGAGAAAATCCCAAAAATCACAATTACTTGTGATGACGATGTTGATGCCTGTGGTGATAGAGTTTCTTGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACTGTTAGAAACTTGCCTCATTGTCATCACATGTTTCACCTACCTTGTATAGATAAGTGGCTCTTCAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 744 0.4234 MEFVANPCPSSSLVASFGNFVERVKQISGLAVSAIIGNIFSAIFTFCFAVVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWKSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQVILAFTSYTFFHQMGAVEASFDEIQNLFDTGDAKGLSGDYVEKIPKITITCDDDVDACGDRVSCSVCLQDFQLGETVRNLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1439 247 ProSiteProfiles Zinc finger RING-type profile. 202 244 IPR001841 -
Sto11g1439 247 CDD RING-H2_PA-TM-RING 202 244 - -
Sto11g1439 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 14 247 - -
Sto11g1439 247 Pfam Ring finger domain 201 244 IPR001841 -
Sto11g1439 247 SUPERFAMILY RING/U-box 201 247 - -
Sto11g1439 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Sto11g1439 247 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 14 247 IPR044523 -
Sto11g1439 247 SMART ring_2 202 243 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1439 Sto-Chr11 13694709 13696047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1439 21 247 C3H Transcription Factor Family AT5G66070 71.806 3.11e-113 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1439 - - ccaj:109800586 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3968 6 43682963 43684460 Sto11g1439 11 13694709 13696047 CCT