Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1416 ATGGGAGGTGACagtgctgctgctgctgctgatcAAGCTACGGAATCGAAGGCCACCGGTGGCGTCAACATCAACATTCGATGCTCCAATGGTTCTAAGTTTTCGGTTCAGACTAGTCTCGATTCTACCGTTGGATCATTCAAGGAAGCTGTCGCTCAGAAGTGCGATATCCCATCCGATCAACAGCGGCTGATTTATAAGGGTCGGATCTTAAAGGACGATCAAACCCTGCTAAGCTACGGTTTGGAGGCAGATCACACTATCCATTTGGTACGTGGCTTTGCACCAGCTGCACCAACCAATACAACTGGTGGGACCAATGCCACAACAACTAATGCAAGAGGTTCTGGTACTAATGATGGTGGGAGTTTAGGAGGGTCTGGTTTTGGAGCTTCATTGTTTCCTGGACTGGGTCTCAATGGGACTGGGGGCAGTGGCATGAATGGCTTATTTGGAGCAGGCCTTCCCAATCTTGAACAAATGCAGCAACCATTTATTTCGAATCCAAATTTAATGAGGGAAATAATGAACACACCTGCTATGCAGAATCTAATAAATAATCCTGAGATAGTCCGTAATCTTATAATGAGTAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGATCCCAACACTCTCCGCCAGACACTTGAAGCTACAAGAAACCCTGAGATTATGCGTGAAATGATGAGAAATACCGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAAGGATTTAACATGCTGAGGCGGATGTATGAGAATGTTCAAGAACCATTCTTAAATGCCACAATGATGGCAGGTAATAATACTGGAAATGATAACTCTAACCCGTTTGCAGCACTGTCTGGGATTCAAGGTGGTCAAGCCAGGAATAGATCAACTAATCCCTCAAATACGAATTCTGAATCAGCTGCTGGTTCTCCCTCCCCCAATACTAGTCCACTTCCTAATCCTTGGACATCTACTGGAAGTGTTGCAGCTGGAGGTACCCAAAATAACACAAGGTCATCTAGTGGAGGGAATGCTAGGCCACAGGCACCCACTGGCTTAGGAGGACTTGGTCTGCCAGATCTTGAAGGTATGATGGGTGCTATGCCGGATCCTGCTTTATTAACCCAGTTAATGCAAAACCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCCCAGGCTATGAATCAGATCCTTGGTGTCAATGCTGAGCAGCGTGGCATGCCTGATTTAAATTCTCATCTTAGACAAATGATGCAAAACCCGGAGTTCATTCGCATGTTTTCTTCACCTGATACAATGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAAACAGGTCAAACTGGCAGGGGTACTGGAACAATGAACAACTTGGGGTTGGAGATGTTGTCAAATATGTTTGGTGGACTTGGAGCTGGTAGTCTTGCTGTTCCCAACAGATCTGATGAGCCACCGGAGCAATTGTATGCCACCCAGCTTTCACAGCTTCAAGAGATGGGCTTCTTTGACACTCAAGAAAACATAAGGGCTCTTATGGCCACTTCAGGTAATGTTCATGCAGCGGTTGAACGGCTTTTGGGGAACTCAGCCATGCAAAAGCATAACCCTTCAAGAGAATCCACCACTAAAACTCCTTCCTCTTCACCTCCGATGGAGGTGGAGGGTTCTAGTGGAGGAGGTGGGTCGAAAGGGGTGGGTAAGCAAAAGCGGAAGGCGTCAGAACCGAGAGATACTCCGGCGGGGAAGCCCACGTGTCAAGTGTGTGGGAAAGAATTTGGAAGCTGGAAATCTGCGTTTGGACATATGAGGGCTCACCCTAAACGCCATTATAGAGGTTTCTTTGAACcaccttctttttcttcctcatcACAACCACTTCATCATCAACCACACGGATCAGAGAATAGAGGTGAGGAAGAAGGTGGGAGATCAGAGAGTGGATTTGATCTGAACCAGACAACGAATGATGAGGAAGAGAGGGTAGTGTTGTCTTCTTCTGAGGCTGCAGCACATAATAATATTCAAGACCAACAAAAGTTTGACCTGAACCAACTCCCACctcatgaagatgatgatgataaacaCAAAGAATaa 2157 0.4469 MGGDSAAAAADQATESKATGGVNINIRCSNGSKFSVQTSLDSTVGSFKEAVAQKCDIPSDQQRLIYKGRILKDDQTLLSYGLEADHTIHLVRGFAPAAPTNTTGGTNATTTNARGSGTNDGGSLGGSGFGASLFPGLGLNGTGGSGMNGLFGAGLPNLEQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPNTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATMMAGNNTGNDNSNPFAALSGIQGGQARNRSTNPSNTNSESAAGSPSPNTSPLPNPWTSTGSVAAGGTQNNTRSSSGGNARPQAPTGLGGLGLPDLEGMMGAMPDPALLTQLMQNPAISQMMQSILSNPQAMNQILGVNAEQRGMPDLNSHLRQMMQNPEFIRMFSSPDTMQQLLSFQQALLSQLGQQQSTQETGQTGRGTGTMNNLGLEMLSNMFGGLGAGSLAVPNRSDEPPEQLYATQLSQLQEMGFFDTQENIRALMATSGNVHAAVERLLGNSAMQKHNPSRESTTKTPSSSPPMEVEGSSGGGGSKGVGKQKRKASEPRDTPAGKPTCQVCGKEFGSWKSAFGHMRAHPKRHYRGFFEPPSFSSSSQPLHHQPHGSENRGEEEGGRSESGFDLNQTTNDEEERVVLSSSEAAAHNNIQDQQKFDLNQLPPHEDDDDKHKE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1416 718 MobiDBLite consensus disorder prediction 652 666 - -
Sto11g1416 718 SMART uba_6 510 548 IPR015940 -
Sto11g1416 718 MobiDBLite consensus disorder prediction 551 574 - -
Sto11g1416 718 ProSitePatterns Zinc finger C2H2 type domain signature. 606 626 IPR013087 -
Sto11g1416 718 MobiDBLite consensus disorder prediction 274 371 - -
Sto11g1416 718 Gene3D - 193 251 - -
Sto11g1416 718 MobiDBLite consensus disorder prediction 630 718 - -
Sto11g1416 718 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 550 - -
Sto11g1416 718 SMART ubq_7 22 93 IPR000626 GO:0005515
Sto11g1416 718 Gene3D - 492 555 - -
Sto11g1416 718 Gene3D - 8 105 - -
Sto11g1416 718 PANTHER UBIQUILIN 3 550 - -
Sto11g1416 718 SUPERFAMILY Ubiquitin-like 17 106 IPR029071 -
Sto11g1416 718 MobiDBLite consensus disorder prediction 99 119 - -
Sto11g1416 718 MobiDBLite consensus disorder prediction 704 718 - -
Sto11g1416 718 MobiDBLite consensus disorder prediction 549 608 - -
Sto11g1416 718 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515
Sto11g1416 718 MobiDBLite consensus disorder prediction 687 703 - -
Sto11g1416 718 CDD Ubl_Dsk2p_like 22 94 - -
Sto11g1416 718 CDD UBA_PLICs 510 548 - -
Sto11g1416 718 Pfam Ubiquitin family 24 91 IPR000626 GO:0005515
Sto11g1416 718 MobiDBLite consensus disorder prediction 637 651 - -
Sto11g1416 718 MobiDBLite consensus disorder prediction 274 354 - -
Sto11g1416 718 Pfam UBA/TS-N domain 510 546 IPR015940 -
Sto11g1416 718 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 504 549 IPR015940 -
Sto11g1416 718 ProSiteProfiles Ubiquitin domain profile. 22 91 IPR000626 GO:0005515
Sto11g1416 718 PRINTS Ubiquitin signature 53 73 IPR019956 -
Sto11g1416 718 PRINTS Ubiquitin signature 74 95 IPR019956 -
Sto11g1416 718 SMART CBM 411 446 IPR006636 -
Sto11g1416 718 SMART CBM 365 407 IPR006636 -
Sto11g1416 718 SMART CBM 198 237 IPR006636 -
Sto11g1416 718 SMART CBM 144 185 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1416 Sto-Chr11 13543713 13551645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1416 606 640 C2H2 Transcription Factor Family AT4G35280 54.286 1.57e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto11g1416 ubiquitin 9.7e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1416 K04523 - gmx:100797539 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4010 6 43930065 43935049 Sto11g1416 11 13543713 13551645 CCT
Sto11g1416 11 13543713 13551645 Sto11g1416 11 13543713 13551645 ECH