Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1409 ATGCCTAAAGTGAAAGCCGACTCGAAAGCCGACGATAACCGGTTGAAGCGCAAGGGCGCCGGAACCGGAAGGAAGCAGTCGAAGAAAGCTGCGAAGGATCCAAACAAGCCGAAGAGGGCTCCTAGTGCTTTCTTTGTGTTTATGTCTGAGTTCAGAGAGCAGTACAAGAAGCAGCATCCAGACAATAGATCTGTAGCCGCTGTCGCCAAAGCTGGTGGTAATGAATGGAAGTCGATGTCTGATGCTGAAAAAGCTCCTTTCATTGCTAAGgcagggaaggaaaaagagaaatacGAGAAAAGTATTCAAGCATACAATAAGAGACTGGCTGAGGGCAAAAATCCTTCAGAGGAAGAAGAGTCTGATAAGTCAAAGTCAGAAGTCAATGACGATGATGATGAGGAGAAGGAGGAGGAGGAAGACGATGAGTAA 432 0.4444 MPKVKADSKADDNRLKRKGAGTGRKQSKKAAKDPNKPKRAPSAFFVFMSEFREQYKKQHPDNRSVAAVAKAGGNEWKSMSDAEKAPFIAKAGKEKEKYEKSIQAYNKRLAEGKNPSEEEESDKSKSEVNDDDDEEKEEEEDDE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1409 143 MobiDBLite consensus disorder prediction 106 123 - -
Sto11g1409 143 MobiDBLite consensus disorder prediction 1 84 - -
Sto11g1409 143 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Sto11g1409 143 MobiDBLite consensus disorder prediction 106 143 - -
Sto11g1409 143 SUPERFAMILY HMG-box 24 108 IPR036910 -
Sto11g1409 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 142 - -
Sto11g1409 143 Coils Coil 88 108 - -
Sto11g1409 143 MobiDBLite consensus disorder prediction 124 143 - -
Sto11g1409 143 SMART hmgende2 36 107 IPR009071 -
Sto11g1409 143 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Sto11g1409 143 MobiDBLite consensus disorder prediction 1 19 - -
Sto11g1409 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 142 IPR031061 -
Sto11g1409 143 CDD HMGB-UBF_HMG-box 37 103 - -
Sto11g1409 143 Gene3D High mobility group box domain 21 122 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1409 Sto-Chr11 13507065 13508250 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sto11g1409 HMG_box 3.6e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1409 K25507 K22507 gmx:100499992 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1409 11 13507065 13508250 Sto11g1409 11 13507065 13508250 ECH
Sto6g4025 6 43993867 43995133 Sto11g1409 11 13507065 13508250 ECH