Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1403 ATGGTTGGAATTTGGCTTGTGGTGCTGATGATTCTCTCAAATGGGCTCTCTTCATCCGGGGTCGGCACAAATGATTCTAGAATACCTGAATTTGTAGATATTGGGGCTCTGTTCTCTTTCAATACCACTGTTGGTAGAGTTGTAAAATTAGCAATTGAAACAGCAGTTGAAGATATAAATTCTGATCCTTCCATTCTTGGTGAAACTAAGCTCAGGGTCTCAATGCAAGAGGATTCTAAATACCGAGGTTTTTTGAGCATTGCGGAGGTGTTGCagctcatgtctaaacatactGTGGCTATAATCGGCCCCCAGACCTCTATAACAGCTCATGTCATTTCTCATGTTGCAAACGAGCTCCAAGTTCCGCTGCTATCATTTTCAGCCACAGAGCCTACCCTTTCTTCACTTCAATTCCCATTCTTTGTTAGAACTGCTCCTAATGATATTTATCAAATGACTGCAATTGCTGAGATTATAAACTACTATGGGTGGAGAGAGGTTATTGCTGTTTATGTAGATGATGACCAAGGGAGAAATGGAATTGCTGCATTAGGGGATAAGCTTGCAGAGCGACGTTGTAAAATCTCATATAAAGCACCTATGAGCCCTGAAGCAACCAGGGAGGAGATTACTGATGTTCTTGTTCAGGTGGCACTTGATGAATCCCGGATTATTGTTCTTCACACTAATCCTAACTGGGGCCCCAAGGTTCTTAGTGTGGCAAAGTATCTTGGGATGATGGGAACTGGGTATGTCTGGATAACCTCTAGTTTTCTCTCTGCTGTTTTGGATACAGACGGTGCCCTCTCTCCTGATGGAATTAACGACATTCAAGGAGTTCTTACACTACGAGTCTACACGCCAGATACAGAGCTCAAAAGAAGGTTCTCTTCCAGGTGGAAGAACATGACTCGTGGAATGACTTCTAATGGCCCCCTTGGATTGAGCACTTTTGGTCTCTTTGCATATGATACTGTTTGTTTGCTTGCTCGTGCACTTGATAAATTTTTCAAACAAGGAAACCAAATCACATTCTCATATGATTCAAAGTTATCTGAACTACATGGAGGCAGCTTGCATCTTGATGCACTGAACATCTTTGATCAAGGAAAAATGTTGCGTGAAAATATTTATGGGATTAACATGACTGGTGTAACAGGTCACATTAAGTATACATCCGATGGCAACCTTGTTAATCCAGCATATGAAATCATCAATGTGATAGGAACAGCTTCCCGGAGGGTTGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCTCCAGAAGCACTTTATTCAAAACTAGCCAATCGTTCCAGTGCAAGTCAAAAGCTACTCCCTGTGATTTGGCCTGGAGAAACGACCCAGAAACCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGCACTTGAGAATTGGAATACCAAGAAGGGTTAGTTACCGAGAATTTGTCTCACAAGTTAAAGGAACTGACTTATTTAAGGGATTCAGCATTGATGTATTTCTTTCTGCTGTGAACTTATTGCCCTATGCTGTCCCCTATAAATTTATCCCATTTGGGGATGGTCACAGCAATCCTAGTAACACTGAACTTGTCCGTCTCATCACAGCAGGTGTCTTTGATGCTGCAGTAGGCGACATTACAATTACAACAGAAAGAACAAGGCTGGTGGATTTTACTCAACCATATATCGAGTCTGGTCTAGTTGTAGTAGCACCAGTTAGGAAGTTGGAATCTAATGCATGGGCCTTTCTAAGGCCATTTACACCGATGATGTGGTGTGTCACCGCAATCTTTTTCTTAGCAGTGGGAGCTGTTGTTTGGATCTTGGAGCATCGGCTAAATGATGATTTTCGCGGACCTCCCAAAAAACAAGTTGTCACAATTTTGTGGTTTAGTTTTTCAACTATGTTCTTTGCCCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTAATCATATGGTTATTTGTGgttcttataattaattcaagttaCACAGCTAGTCTGACCTCAATCCTCACAGTACAACAGCTTTCTTCGCCCATTAAAGGGATCAGCAGTTTAGTAAACAGCAAAGAACCTGTTGGTTACTTGCAGGGTTCTTTCACTCGAAATTATTTAGTTGAGGAAGTCGGTATTCATGAATCAAGACTTGTTCCTCTAAAAACACAAGATGAGACTGCTAAAGCATTGAAAGATGGGCCAAAAAAGGGTGGTGTGGCTGCATATATTGATGAGCGTGCTTACATAGAGCTCTTCCTTTCGAGCCGGTGCGATTTTACTATTGTAGGTCAAGAGTTCACCCGAAATGGTTGGGGATTTGCCTTTCCCAGAGACTCTCCTTTAGCAGTTGACCTATCAACTGCAATTCTGGAGTTAGCAGAAAATGGAGATCTTCAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGCTTATCACAAGGTGCAAAGCTTGAAGTGGACAGGCTTGAACTCAAAGCCTTCTGGGGACTTTATCTAATATGTGGCTTTGCATGCCTGCTTGCTCTCCTCATCTATTTCATACAGACAATGAGGCAGTACAACAAACATCACACCGAGGATCTCGAGACTTCCGGCCGGAGCTCGACATCTTCGCGCCTCAAGACTTTCCTGTCGTTCGTAgatgaaaaagaagaggaagttAAGCACCGATCCAAGCGAAGACAAATGGAAAGGATCTCATACAGAAGCAACAGTGAGATTGGATCATTATCTGTATCAACCACCATGTGCTCCAACAAAGGTTATGCTCAATCTTCTTCAAACAGAAGCATTGATTGTAATAATGAAGCCTGA 2835 0.4162 MVGIWLVVLMILSNGLSSSGVGTNDSRIPEFVDIGALFSFNTTVGRVVKLAIETAVEDINSDPSILGETKLRVSMQEDSKYRGFLSIAEVLQLMSKHTVAIIGPQTSITAHVISHVANELQVPLLSFSATEPTLSSLQFPFFVRTAPNDIYQMTAIAEIINYYGWREVIAVYVDDDQGRNGIAALGDKLAERRCKISYKAPMSPEATREEITDVLVQVALDESRIIVLHTNPNWGPKVLSVAKYLGMMGTGYVWITSSFLSAVLDTDGALSPDGINDIQGVLTLRVYTPDTELKRRFSSRWKNMTRGMTSNGPLGLSTFGLFAYDTVCLLARALDKFFKQGNQITFSYDSKLSELHGGSLHLDALNIFDQGKMLRENIYGINMTGVTGHIKYTSDGNLVNPAYEIINVIGTASRRVGYWSNYSGLSVVPPEALYSKLANRSSASQKLLPVIWPGETTQKPRGWVFPNNGRHLRIGIPRRVSYREFVSQVKGTDLFKGFSIDVFLSAVNLLPYAVPYKFIPFGDGHSNPSNTELVRLITAGVFDAAVGDITITTERTRLVDFTQPYIESGLVVVAPVRKLESNAWAFLRPFTPMMWCVTAIFFLAVGAVVWILEHRLNDDFRGPPKKQVVTILWFSFSTMFFAHRENTVSTLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSPIKGISSLVNSKEPVGYLQGSFTRNYLVEEVGIHESRLVPLKTQDETAKALKDGPKKGGVAAYIDERAYIELFLSSRCDFTIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLELKAFWGLYLICGFACLLALLIYFIQTMRQYNKHHTEDLETSGRSSTSSRLKTFLSFVDEKEEEVKHRSKRRQMERISYRSNSEIGSLSVSTTMCSNKGYAQSSSNRSIDCNNEA 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1403 944 Gene3D - 754 819 - -
Sto11g1403 944 Pfam Receptor family ligand binding region 48 410 IPR001828 -
Sto11g1403 944 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Sto11g1403 944 Gene3D - 583 711 - -
Sto11g1403 944 PIRSF IGluLR_plant 1 943 IPR017103 -
Sto11g1403 944 SUPERFAMILY Periplasmic binding protein-like I 28 464 IPR028082 -
Sto11g1403 944 Gene3D - 463 582 - -
Sto11g1403 944 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Sto11g1403 944 PANTHER GLUTAMATE RECEPTOR 10 930 - -
Sto11g1403 944 CDD GluR_Plant 472 812 - -
Sto11g1403 944 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 930 - -
Sto11g1403 944 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Sto11g1403 944 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Sto11g1403 944 Pfam Bacterial extracellular solute-binding proteins, family 3 495 812 IPR001638 -
Sto11g1403 944 Gene3D - 148 425 - -
Sto11g1403 944 Gene3D - 50 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1403 Sto-Chr11 13461299 13465848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1403 5 913 Ion Channels AT3G51480 60.417 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1403 K05387 - gmx:100788917 1492.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4036 6 44075026 44078984 Sto11g1403 11 13461299 13465848 CCT