Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1398 ATGGGTCGTAACGGCGTGCCGGTGTCGTCATCGTCGCCGTCGCTGGCTTTGGGATTTGCGGTGACAGCTTTGGAGCTCACGGAATCGTCCAGTTGGTGGCATGACATCAATGAATCTCCGGTCTGGCAGGATCGTATCTTTCACGTTCTCGCTGCTCTTTATGGGATCGTCGCTGTCGTTGCTTTGgTTCAATTAGTTCGAATTCAATTGAGAGTGCCAGAATACGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAACTTTTTGGTGAACGGGGTTCGAtgttttgtttttgtatttCGCCGGGATGTGCAGAAGTTAAAGCCAGAGATTGTTCAACATATAATACTTGACGTGCCAAGCCTTGCCTTCTTTACCACCTATGCCCTCTTGGCCCTATTCTGGGCAGAGATTTACTACCAGGCAAGTTTAATTTGTTGTACATTAGCTATGGTCTGCCACTTTTGGTTTTCTTCTTCAACTTCAGCTTATTTCGCCAGTAGGTGGTCTGACTACTATGCTGATGTTGATACTTTACAGGCACGTGCTGTGTCTACTGATAGACTGAGGCCAAGTTTTTATGCAATTAATATAGCGGTTTATGCTGTTCAGATTGCTTTGTGGTTGATATTATGGTGGAAACCTATCAATTTATTGGTCATCCTGTCTAAGATGTTCTTTGCCGGGGTCTCTTTGTTTGCAGCTCTTGGGTTTCTTCTCTATGGTGGAAGACTTTTCCTCATGCTGCAACGATTCCCTGTCGAATCCAAAGGGCGGCGCAAGAAGCTGCAAGAAGTTGGTTATGTGACCACCATATGTTTTGCATGTTTCCTCATCAGGTGTATTATGATGTGCTTTAATGCATTTGATAAAGCTGCCAACCTTGATGTATTGGACCATCCCATTCTAAACTTCATCTATTATCTGTTgtcggagatattgccttcttcTTTGGTCCTTTTTATTCTGAGGAAGCTGCCACCCAAGCGAGAACCATCGCCACAGTTGACGTCGTCGCCGCCGCCATCGTCGGTGGAATGTAGTCTTAGAACTCCAGCGTTCAAaggttcttctcttcttcttctcgatttcccatcctcttcttcctcttccattcttcttctcgatCTGCTTCGGCTCCACCCAGATCTGCTTCGACTTCTCGATCTCCCATCCCCTTCATCTTATGGAAGTGAATGTGAGTACCGCCATAGTGAGTATGCCCGAGTTAATCCTCGAGATTGTTGGTATTGGTTGAATGGTAATTGCTTGAATCCCAAATGTTCCTTCCGTCATCCGCCTCTTGATGGCTTCTTAGGGCCACAGGCTGCCACTGCTGGTGGATCATCTGCCGCCCCACCACAGATGGCACCACAGATTGCAACAACTTCTGCAACACATGCACCTTACAATTCTAGCAAACAGCCTGTCCCTTGCATCTTCTTCCAGAAAGGGATCTGCTTAAAAGGCGACAGATGCGCTTTCTTGCATGGACCACCTAATCCCAACATGACTAATAAAGTTCCTCAGGTCCAGGTGACCAACCAGAGTACAGAGCCTCCTAGTTTTAAGAAAGCTTTTGCTGGCACAGAAAAGTCTACACAGGAAAGGAAAATTTCCCAAGCAAACATTGCAAAGTCAGTTGGAGGCTCTGAATCTAAACCTTCCCAAAATGTTGAAACTGCTTTACAGAGAAATGTAATTGGCATAGATAGGCATCCGCCACCACCCACGGGATTTGATAATGAGGCTTCTAGATTTAAGGTAACGAATACTCCACCTGTTTCCAATGGAACCTCTGTTACCAGGCCTAACCGTCTGCATCAGTCTCATGTATCAGAAGATCATAATTTCCACAACGGTAAGGAAAGTGATGAGTTTTTGAGAGAATCATCTCCTGGGTTTGATGTTCTTGTAGCCGATGAACTTAGGAATTCTGATTACTACGATGGAGAGGATCAGTTTGGAAAAGCGAGAGGTCAAGATAGAATGAACTTGGATTCTGTGAATGAATATGATATGGGACATCCTGTGGATTATAAATCAGTAGCTGATATTGAGCGAGAAAGATATTTGGGGCCACAAGGCTATGATTCATATGATCACATGCAAGAGACATATGCTTGGGATCAGCAAAGGAATTCATCTGAAAGAATGTTCAGGGCACCAACCCATTTAGAAAGAATGACTCACCGCAAATCTAGGAGTCCTGAAAATGTTGGGGTGTCTGATCTTCGACTTCAATTATCCAAGCGCAGGAGAGTCAGTGGATTGAAATCTGTTGTCAGTCATGATTATGCACTTCAGAGCCATGATGATGAGCAAAGTCACCGCTTCTCTTCTCGAAAGGATTCATTCCAGTTACCTCTGAACGAAAGCTCCCTCAGTAACCGCTTCCGGGGCAGGATAAAGCTTCCAGCAAATGGTGGTGATGATCATCTGGAGAGGGAATCAGACAGGGGACGAAATAGGAGGGCATTGTCGCCTGGAACTGTGCAGCCCCCTCTCCAAGGAAGGCTCCGGGATAGATTAAGAGGAAGATTACAAgaagattttgagcagaaaaactCTAGGGACCGACCACTGAGGAGAGAAATAATTGGGGACCGAAACTCTGATTTTGATGGTCCCAAAAGTCTTGCTGAACTACGAAATGTAAGGAATACTGAATACAAGGAGCAGCAATCACTTGGGAAGAGAAAAAGTTTGAAGGAACCGCAACAATCTGAAGATGATTTTCTGTTTGAAGGCCCAAAACCTCTTAGTGAGATTTTGAAAGAGAAGAGAGCTGGATCTGGAGCCGGTTCGAAGAGTGGCAAATCATCTGATAATAGAGGAGACAACAAGTATAGAGAAATTACAAATGGCTCAGAGTATACCTCTGTCACAGACACACAAAATGGCACTTTGCCTGAAACAAAGGAAGATGCTAAGAACCACGTGCTAGCTAATAAGGGAGATTCCGAGTTTCAGGTGACTGACACGGTTGGAAGAGACGTAGAAAAGACTGATTTAACTCATGGTCAGTCATCTGAAGATGGAATGATATACGATGAAGCCATAGAAGACCAGGAGTATGAAGGTGACGATGATCAGAAGGATGGTGAGTATTATTATGATGAGCAAGGTGAAGAGGGAGACTATCAATATGAAGAAGGTGAAAACCCAGAGCAGGAAGAATatgttgatgatgaagatggggATGACTTTGCCAAGAAGATTGGTGTCATGCTCACGTGA 3240 0.429 MGRNGVPVSSSSPSLALGFAVTALELTESSSWWHDINESPVWQDRIFHVLAALYGIVAVVALVQLVRIQLRVPEYGWTTQKVFHFLNFLVNGVRCFVFVFRRDVQKLKPEIVQHIILDVPSLAFFTTYALLALFWAEIYYQASLICCTLAMVCHFWFSSSTSAYFASRWSDYYADVDTLQARAVSTDRLRPSFYAINIAVYAVQIALWLILWWKPINLLVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFACFLIRCIMMCFNAFDKAANLDVLDHPILNFIYYLLSEILPSSLVLFILRKLPPKREPSPQLTSSPPPSSVECSLRTPAFKGSSLLLLDFPSSSSSSILLLDLLRLHPDLLRLLDLPSPSSYGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGFLGPQAATAGGSSAAPPQMAPQIATTSATHAPYNSSKQPVPCIFFQKGICLKGDRCAFLHGPPNPNMTNKVPQVQVTNQSTEPPSFKKAFAGTEKSTQERKISQANIAKSVGGSESKPSQNVETALQRNVIGIDRHPPPPTGFDNEASRFKVTNTPPVSNGTSVTRPNRLHQSHVSEDHNFHNGKESDEFLRESSPGFDVLVADELRNSDYYDGEDQFGKARGQDRMNLDSVNEYDMGHPVDYKSVADIERERYLGPQGYDSYDHMQETYAWDQQRNSSERMFRAPTHLERMTHRKSRSPENVGVSDLRLQLSKRRRVSGLKSVVSHDYALQSHDDEQSHRFSSRKDSFQLPLNESSLSNRFRGRIKLPANGGDDHLERESDRGRNRRALSPGTVQPPLQGRLRDRLRGRLQEDFEQKNSRDRPLRREIIGDRNSDFDGPKSLAELRNVRNTEYKEQQSLGKRKSLKEPQQSEDDFLFEGPKPLSEILKEKRAGSGAGSKSGKSSDNRGDNKYREITNGSEYTSVTDTQNGTLPETKEDAKNHVLANKGDSEFQVTDTVGRDVEKTDLTHGQSSEDGMIYDEAIEDQEYEGDDDQKDGEYYYDEQGEEGDYQYEEGENPEQEEYVDDEDGDDFAKKIGVMLT 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1398 1079 MobiDBLite consensus disorder prediction 801 1017 - -
Sto11g1398 1079 MobiDBLite consensus disorder prediction 1042 1066 - -
Sto11g1398 1079 MobiDBLite consensus disorder prediction 805 824 - -
Sto11g1398 1079 MobiDBLite consensus disorder prediction 608 629 - -
Sto11g1398 1079 MobiDBLite consensus disorder prediction 885 912 - -
Sto11g1398 1079 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 397 1078 - -
Sto11g1398 1079 Pfam RNA-binding, Nab2-type zinc finger 414 433 - -
Sto11g1398 1079 SUPERFAMILY CCCH zinc finger 474 498 IPR036855 GO:0046872
Sto11g1398 1079 Pfam THH1/TOM1/TOM3 domain 179 332 IPR009457 -
Sto11g1398 1079 Pfam THH1/TOM1/TOM3 domain 29 144 IPR009457 -
Sto11g1398 1079 Gene3D - 463 528 - -
Sto11g1398 1079 Gene3D - 394 435 - -
Sto11g1398 1079 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 476 499 IPR000571 GO:0046872
Sto11g1398 1079 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 397 1078 - -
Sto11g1398 1079 MobiDBLite consensus disorder prediction 584 607 - -
Sto11g1398 1079 MobiDBLite consensus disorder prediction 1042 1067 - -
Sto11g1398 1079 ProSiteProfiles Zinc finger C3H1-type profile. 473 500 IPR000571 GO:0046872
Sto11g1398 1079 MobiDBLite consensus disorder prediction 840 877 - -
Sto11g1398 1079 MobiDBLite consensus disorder prediction 569 629 - -
Sto11g1398 1079 MobiDBLite consensus disorder prediction 953 970 - -
Sto11g1398 1079 MobiDBLite consensus disorder prediction 992 1008 - -
Sto11g1398 1079 SMART c3hfinal6 473 499 IPR000571 GO:0046872
Sto11g1398 1079 SMART c3hfinal6 411 434 IPR000571 GO:0046872
Sto11g1398 1079 ProSiteProfiles Zinc finger C3H1-type profile. 409 435 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1398 Sto-Chr11 13411808 13427939 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto11g1398 DUF1084 8.2e-79 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1398 - - gmx:102669253 799.275