Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1388 ATGAAGCGCGATTTCTACGAAATCTCCGATGACGAATGGGACAATCATTCCTTTAAGCCCTCTCGAGTTCTCAAGAAACCGCAGACTTCTACTACTCCGCCTCCTCCTCCTATTGAGTCCTTCGCTTTTGGGTCTACTAATCCCGATATTTCCGACAATAGTAGCGATGATGATTGCGTCGAAGTGACGGGAAATTTGGTGGAGCAAGGTTTGGAGGATGAGGATGTCGAGCTAGAGAGAGGCAGGTCTCGGGCAGTGGCAAATCGTGGCCGTCGCTTCGTTGTCGATGACGAGGAGAGTGATGGGGATGTTGAGGAGAGCAATAGGGATGTTGAGGAAGTGTATGAAATAAGCTCAATTGATGATGAGGacgaaggagaggaggaggaggaggaaggggATGAAAATGACGTGGTGGGTAGGGCTTTGCATAAATGTGCAAAAATATCTTCGGAATTGAAAAGAGAGCTGTATGGGTCCTCGGGGACTGCTTGCGATCGGTATTCTGAGGTGGAGTCTTCTTCAGTGAGAATTGTAAATCAGGATGATATTGATGTGGCATGTGGGTCCGAGGATTCTGATTTTCAGCCTGTTCTCAAGCGATATCAGCTGGTTGGTGTCAACTTTTTGCTTCTCTTGCATCGGAAGGGTATCGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACAGTTCAGGCCATCACATATTTAACCATGTTGAAACACTTGCACAATGATCCTGGTCCACATCTTATAGTATGCCCTGCTTCTGTTTTGGAAAATTGGGAAAGGGAGTTACAAAGGTGGTGCCCATCTTTTTCTGTTGTACAATATCATGGTGCTAGACGAGCAGCATACTGCAAGGAGTTGAACTCTCTATCTAAGGCGGGCTTGCCTCCTCCATTTAATGTGCTTCTTGTGTGTTATTCGCTGTTTGAACGGCACAGTGCACAGCAGAAGGATGATCGTAAAATTCTAAAGCGTTGGAGGTGGAGTTGTGTTCTGATGGACGAGGCACATGCTCTGAAGGACAAAAATAGCTATAGGTGGAAGAATTTGATGTCTGTTGCACGAAATGCAAACCAGCGGTTGATGCTGACGGGGACGCCACTTCAAAATGATCTTCATGAGTTGTGGTCATTATTGGAATTTATGATGCCTGATCTTTTTGCTACTGAAGATGTTGACTTGAAAAAGTTACTGAATGCAGAAGATAGAGATTTAGTTGGTCGCATGAAGTCCATCCTAGGGCCATTTATATTACGGCGACTAAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATACAACGAGTTGAATATGTTGTAATGGAAATGCAACAGGAACATGCCTATAAAGAAGCCATTGAGGAGTATCGTGCTATTTCACAAGCTCGAATGGCAAAATGTTCAAACTCCAATAATGTTCTTGaacttcttcctcgccgacaaatTAACAACTATTTTGTCCAGTTCCGCAAGATTGCAAACCATCCCTTGTTAGTGAGGCGAATTTATAGTGATGAGGATGTTATTCGCTTTGCTAAGAAGTTACATCCAGTGGGTGTTTTTGGCTTTGAATGTACTTTGGACAGAGTTATTGAGGAGCTTAAAAGTTACAATGACTTCTCCATTCACCGGCTTTTACTACACTATGGCGTCACTGATAGAAAGGGTATCCTTTCAGATAAATATGTAATGCTTTCGGCAAAATGTCGGGTGTTATCAGAACTTCTTCCTTCCCTACAAAAGGGTGGTCATCGGGTTTTAATATTCAGTCAGTGGACATCAATGCTTGACATATTGGAATGGACGCTGGATGTCATTGGATTGACCTATAGACGACTTGATGGAAGTACACAGGTAACAGAGAGGCAAACAATAGTTGATACGTTCAATAATGATACTTCAATATTTGCATGCTTACTTTCTACGAGAGCTGGAGGACAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCACAAATTGATAGACAGGCAGAAGATCGCTGTCATCGGATCGGTCAAATGAAGCCTGTAACTATATATCGACTGGTGACCAAGGGTACAGTTGATGAAAATGTATATGAGATTGCAAAAAGAAAGCTAGTATTGGATGCTGCTGTGCTCGAGTCTGGCATGGAGGTGGATAATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTATCTGCAATTTTGTTGGGTTAA 2244 0.4193 MKRDFYEISDDEWDNHSFKPSRVLKKPQTSTTPPPPPIESFAFGSTNPDISDNSSDDDCVEVTGNLVEQGLEDEDVELERGRSRAVANRGRRFVVDDEESDGDVEESNRDVEEVYEISSIDDEDEGEEEEEEGDENDVVGRALHKCAKISSELKRELYGSSGTACDRYSEVESSSVRIVNQDDIDVACGSEDSDFQPVLKRYQLVGVNFLLLLHRKGIGGAILADEMGLGKTVQAITYLTMLKHLHNDPGPHLIVCPASVLENWERELQRWCPSFSVVQYHGARRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNAEDRDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEMQQEHAYKEAIEEYRAISQARMAKCSNSNNVLELLPRRQINNYFVQFRKIANHPLLVRRIYSDEDVIRFAKKLHPVGVFGFECTLDRVIEELKSYNDFSIHRLLLHYGVTDRKGILSDKYVMLSAKCRVLSELLPSLQKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQMKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEVDNKGDMPEKTMGEILSAILLG 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1388 747 MobiDBLite consensus disorder prediction 44 60 - -
Sto11g1388 747 Pfam Helicase conserved C-terminal domain 573 685 IPR001650 -
Sto11g1388 747 Pfam SNF2-related domain 218 503 IPR000330 GO:0005524|GO:0140658
Sto11g1388 747 MobiDBLite consensus disorder prediction 75 98 - -
Sto11g1388 747 CDD SF2_C_SNF 563 696 - -
Sto11g1388 747 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 72 745 - -
Sto11g1388 747 Gene3D - 560 742 IPR027417 -
Sto11g1388 747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 390 IPR014001 -
Sto11g1388 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 727 IPR027417 -
Sto11g1388 747 CDD DEXHc_Snf 199 392 - -
Sto11g1388 747 SMART helicmild6 602 685 IPR001650 -
Sto11g1388 747 MobiDBLite consensus disorder prediction 1 137 - -
Sto11g1388 747 Gene3D - 179 449 IPR038718 -
Sto11g1388 747 PANTHER SNF2/RAD54 HELICASE FAMILY 72 745 - -
Sto11g1388 747 SMART ultradead3 195 400 IPR014001 -
Sto11g1388 747 MobiDBLite consensus disorder prediction 1 21 - -
Sto11g1388 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 425 IPR027417 -
Sto11g1388 747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 576 738 IPR001650 -
Sto11g1388 747 MobiDBLite consensus disorder prediction 99 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1388 Sto-Chr11 13360594 13367098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1388 220 712 RAD5 or RAD16-like Gene Family AT5G22750 27.124 1.32e-44 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto11g1388 SNF2_N 4.6e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1388 K14439 - gmx:100806323 1208.74