Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1366 ttgtctGCACGTGCAACCGTGAAGCTGAAGGCTGTGTGTAAAGGAAAGTCTGACTCTGCCGCTTCATCCCAAAAACTGAAAAATGGATGCGTTATGGTTCAGTTTCTTGTTGTGCTTTCTCATGCGTGGTTAAAATTGGAGATGAGTGATACCAAAGACAAAGAGGAACCTAGCCGGGACATGCCATTGGCTGTGAATGAAAGCCAGCAGTTGGTTGATGGGCAGGGTCAACCCCAAGCTTCTTCTGATCCCGTTCCAATAGAAGAAACTGTAAATCATGTTGACATTGGGAAGGTAGCAGCTCTTATTGATGTTAAAAATGAGAAACCAGAGGCCATTTCAGAGGATGCTCCGCAACAAGAAGTTCAAGACATCCCAGTAGAAGTTAATGCTCAAATTTTGGTTAAAACTGACTCTGAACACACTTCAGACGTGAAGACTGAAGTTGAAGAATCTCAGAGGAATACAGGCAATGAGAGTGGTGCCAATGCATGTGAAAATCATACTAATGCTGAAATAATTGTGGAGGTCAAGCCAGAAGCTTGTAATATGCTCAATGGTAAAAATAAAGGTGACTCTGAAATTACAAGTCATACGGAACCTACTACACCTCCAGCTGTTCCTGTAGATACTAAAGCTGAGATGAAGAATGGAGTTGAGAATAAGGATAATGAAAAGCAAGCAACTGCATCTGCAGATAATGggaattcaaattcaaagcacTTGATTATTTGGGATGCTGACCATTCATATAATGGAAATGTGTCTGGAACAGAAGAGGATCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTCAGGGAGAGGAGCATGGAATTCAAACCCCCGAAGTTCTATGGAGAGGGACTTAATTGCCTTAAGTTATGGAGAGCAGTGACCAGATTGGGTGGCTATGATAAGGTAACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGGCATAAAACAAACGGTGGCGAGCTTACTGTACCTATTGTTGCTCATACAGAACCGATGATTATTGAAAATCAGGCTTTAGCATCAGGTAGAGCACGGAGAGATGCTGCAGCACGGGCTATGCAAGGTTGGCACTCACAACGTCTTCTTGCTAATGGTGAAGTTAGTGACCCAATTATTAAGgaTAGGAATTCTATGTCTTTGCAAAAGCGGGAAAAGCAGCTTAAAAGTATTAGTTTACTTAAACGTAAGAAACCATCTTACTTGGATAATGCAGTCAAAGCAGCACGTAGTAAACCATCTAAGCCACAATTGCACACATCAGTGATTGATATTGGACCTCCTGCTGATTGGGTCAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTACGCTTTAGTTCCTGGGCTTCTTCGGGAGGAGGTGCGTGTTCAATCAGATCCAGCTGGACGCTTGGTCATAAGTGGTGAACCTGAGCATCCTGATAATCCTTGGGGTGTGACACCTTTCAAAAAGATTGTGAGCTTGCCTTTAAGAATCGACCCTCATCACACATCAGCCGTGGTGACCCTTCATGGACAGTTATTCGTTCGGGTTCCATTTGAGCAATCAGAATAG 1662 0.4176 LSARATVKLKAVCKGKSDSAASSQKLKNGCVMVQFLVVLSHAWLKLEMSDTKDKEEPSRDMPLAVNESQQLVDGQGQPQASSDPVPIEETVNHVDIGKVAALIDVKNEKPEAISEDAPQQEVQDIPVEVNAQILVKTDSEHTSDVKTEVEESQRNTGNESGANACENHTNAEIIVEVKPEACNMLNGKNKGDSEITSHTEPTTPPAVPVDTKAEMKNGVENKDNEKQATASADNGNSNSKHLIIWDADHSYNGNVSGTEEDQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELTVPIVAHTEPMIIENQALASGRARRDAAARAMQGWHSQRLLANGEVSDPIIKDRNSMSLQKREKQLKSISLLKRKKPSYLDNAVKAARSKPSKPQLHTSVIDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKIVSLPLRIDPHHTSAVVTLHGQLFVRVPFEQSE 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1366 553 MobiDBLite consensus disorder prediction 138 165 - -
Sto11g1366 553 Pfam Hsp20/alpha crystallin family 470 552 IPR002068 -
Sto11g1366 553 SUPERFAMILY HSP20-like chaperones 462 549 IPR008978 -
Sto11g1366 553 SUPERFAMILY ARID-like 258 362 IPR036431 GO:0003677
Sto11g1366 553 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 453 553 IPR002068 -
Sto11g1366 553 Gene3D - 452 553 IPR008978 -
Sto11g1366 553 SMART bright_3 260 351 IPR001606 GO:0003677
Sto11g1366 553 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 46 552 IPR045147 GO:0006357
Sto11g1366 553 Gene3D - 259 356 IPR036431 GO:0003677
Sto11g1366 553 CDD ARID 261 346 - -
Sto11g1366 553 Pfam ARID/BRIGHT DNA binding domain 262 346 IPR001606 GO:0003677
Sto11g1366 553 MobiDBLite consensus disorder prediction 185 210 - -
Sto11g1366 553 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 46 552 - -
Sto11g1366 553 MobiDBLite consensus disorder prediction 189 204 - -
Sto11g1366 553 CDD ACD_sHsps-like 468 548 - -
Sto11g1366 553 MobiDBLite consensus disorder prediction 139 153 - -
Sto11g1366 553 ProSiteProfiles ARID domain profile. 259 350 IPR001606 GO:0003677
Sto11g1366 553 SMART ARID_2 256 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1366 Sto-Chr11 13200414 13209092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1366 256 551 ARID Transcription Factor Family AT1G76510 65.116 1.70e-129 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sto11g1366 HSP20 0.00012 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1366 - - gmx:100781627 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1366 11 13200414 13209092 Sto11g1366 11 13200414 13209092 ECH