Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1330 ATGGAGCTTACTCAACTTAGTTTTCTAGAGGAATTACTAGCATCAACAAGATCAGGAGACACCTCCTCCAATAATTTTCCCACTTCTGAGCTTTTATTACCTACCACCAGTTCTTGGAGCTTCTttgaatttgattctttttATGAAAACCCATCTTTTAATTCTACCTTTAACCCACCATTTTCTGCATTCCCAACACCAATCATAGACCACaacacatcatcatcatttggatGTCCCTATCCCTACCCTTTTGATGATGACTCTGCACCACCTCCCCTTCAACCTCAGGAAGATGAATTAGACCACCTTGCTTTTCTGGGTTTCCAAAATCAGTGTTTATTTGAAGAAAGAAtccatgataataataataacaatagctgcaaaactgaagaagaagaagaagccacaCAAGAACAAGTTCCAGTGTTCAATATGGGCTTGTGTTGTGGAGACAAGAGGCCTAAATCCAAGAAGCTACTACAAGGTCAGCCCTCTAAGAATCTCATggcagaaagaagaagaagaaaacgtcTCAATGACCGCTTGTCCATGCTAAGGTCAATTGTCCCTAAGATCAGCAagATGGATAGGACTGCTATTCTTGGAGATACGATAGATTACATGAAAGAGCTTCTGGAAAAGATAGGGAAGCTGCAAGAAGAAGATGCAGATAATCATCACATAAAGCTCTTGGGAGTTTCCAAGGAGGTGAAGCCAAATCAAGTAATGTTTGATGTTGAGAGGAGAGAGCAAGACACAAGAATCAATATCTGTTGTGCCGCAAAGCCTGGATTGTTACTATCAACAGTGAATAGCTTAGAAGCATTAGGCCTAGAGATTCAGCAATGTGTTATAAGTAGCTTTAATGATTTCTCAGTGCAAGCATCTTGCTCAGAGGTGGGTGAGCAGAGAACACGCATTAGCTCTGAAGAGATTAAGGAAGCACTATTCAGAAACGCAGGTTATGGAGGCAGATGTCTCTAG 987 0.3658 MELTQLSFLEELLASTRSGDTSSNNFPTSELLLPTTSSWSFFEFDSFYENPSFNSTFNPPFSAFPTPIIDHNTSSSFGCPYPYPFDDDSAPPPLQPQEDELDHLAFLGFQNQCLFEERIHDNNNNNSCKTEEEEEATQEQVPVFNMGLCCGDKRPKSKKLLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKIGKLQEEDADNHHIKLLGVSKEVKPNQVMFDVERREQDTRINICCAAKPGLLLSTVNSLEALGLEIQQCVISSFNDFSVQASCSEVGEQRTRISSEEIKEALFRNAGYGGRCL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1330 328 Gene3D - 161 228 IPR036638 GO:0046983
Sto11g1330 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 223 IPR036638 GO:0046983
Sto11g1330 328 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 4 328 - -
Sto11g1330 328 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Sto11g1330 328 SMART finulus 169 218 IPR011598 GO:0046983
Sto11g1330 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Sto11g1330 328 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1330 Sto-Chr11 12897218 12898610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1330 154 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.730 1.98e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto11g1330 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1330 - - gmx:100806571 357.836