Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1321 ATGACTGACTATCGCTTGCCGGCCACCATGAATCTCTGGAGCGACGATAACTCTTCCGTTATGGAGGCTTTCATGAGCTCCGATCTCTCTTCCCTCTGGCCTACTCCGCCTCAACCCCAATCCTCTGCTTCCACCACTACTCCTGGACCCCTCTCTCAATCTCAACAACCTTCTCTTTGTCACTTCAATCAGGAGACTCTCCAGCAACGCCTCCAGGCCTTGATCGAAGGAGCCAGAGAGAGCTGGACCTACGCCATCTTCTGGCAATCTTCCTGTGACTATTCCGGAGCCTCCGTCCTCGGTTGGGGCGATGGCTACTACAAAGGCGAGGAAGATAAAGCAAAAGGTAAGGCCAAGGCCAAGGCTAAAACCGCCTCCTCCTCCGCCGCTGAGCAGGAACACCGCAAGAAGGTTCTTCGCGAACTCAATTCCCTCATCTCCGGATCTTCCGCTTCCCCTGACGACGCCGTCGACGAAGAAGTTACCGACACCGAGTGGTTCTTCTTGGTTTCCATGACGCAGTCCTTTTTCAACGGTGGCGGATTACCGGGTCAGGCCTTCTTCAATTCCAGTCCCGTCTGGGTCACCGGTTCGGACCGATTGGCGGGTTCCACATGCGAGAGGGCGAGGCAGGGGCAGGTCTTCGGGCTTCAGACCATAGTATGCATACCGTCGGCGAGTGGAGTTGTTGAATTGGGATCCACTGAGCTCATTTTTCAAAATTCCGATCTGATGAATAAGGTTAGAGTAttgttcaatttcaattcccCAGAAGGAGGTTCTTCGTGGCCTCCACTAACCGCTAGTAATACCGATCAAGGCGAGAACGATCCTTCTTCACTCTGGCTTAACGATCCCTCTAGCGGAATTGAAATTCGGGATTCGATTACCACTACGACTACGACTACGACTATTGCGCCGACTTCAGTACCAAGTTCAACGAATAGTCATAATCCGCCAATTACGAAGCCGATGCAGTTCGATACACGAGGTTCTAGCACTTTGACTGAAACCCCGAGTGCCGCTCATATGTCAAACGCTCACCAGCCGCCGCCGCCGCAGCAGAATCAGGCGTTCTTTTCGAGGGAATTGAACTTTTCGGATTACGGATTGGACGGAAACGGAGTGAAGAACGGAGGTAACTCACATTCGTTGAAGCCGGAATCGGAAGAGACCAACAAGAAGAGGAGGTCACCTACTTCTCGGAGCAGCAACGACGAAGGCATGCTTTCATTCACTTCCGGTGTCGTTTTGCCCGCTTCCAATATGAAGCCCGCCGGCGGCGGCGGAGATTCTGATCATTCCGATCTGGAAGCTTCTGTGGTGAAGGAGGTAGAGAGTAGCAGAGTGGTGGAGCCAGAGAAAAAACCACGGAAAAGAGGACGGAAGCCTGCAAATGGCAGAGAAGAGCCTCTGAATCACGTTGAAGCAGAGAGGCAGAGGCGAGAGAAGCTGAATCAGAGATTCTATGCACTTCGAGCAGTGGTTCCAAATGTGTCAAAGATGGATAAAGCATCCCTTCTGGATCCAAAGGTTACCACCAATAATCAAACAAGCAAGCTCATTGATTTAGACATAGACGTGAAGATTATTGGTTGGGATGCGATGATAAGGATCCAGTGCAGCAAGAAGAATCATCCTGCAGCGAGGTTAATGGCAGCATTGAAGGAGCTAGACTTGGATGTGCACCACGCAAGTGTGTCGGTTGTGAATGATTTGATGATCCAACAGGCAACGGTGAAGATGGGAAGTCGATTCTACACACAGGATCAGCTTCGGATAGCACTTTCGTCCAAGGTTAGCGATGTCCGATGA 1815 0.5096 MTDYRLPATMNLWSDDNSSVMEAFMSSDLSSLWPTPPQPQSSASTTTPGPLSQSQQPSLCHFNQETLQQRLQALIEGARESWTYAIFWQSSCDYSGASVLGWGDGYYKGEEDKAKGKAKAKAKTASSSAAEQEHRKKVLRELNSLISGSSASPDDAVDEEVTDTEWFFLVSMTQSFFNGGGLPGQAFFNSSPVWVTGSDRLAGSTCERARQGQVFGLQTIVCIPSASGVVELGSTELIFQNSDLMNKVRVLFNFNSPEGGSSWPPLTASNTDQGENDPSSLWLNDPSSGIEIRDSITTTTTTTTIAPTSVPSSTNSHNPPITKPMQFDTRGSSTLTETPSAAHMSNAHQPPPPQQNQAFFSRELNFSDYGLDGNGVKNGGNSHSLKPESEETNKKRRSPTSRSSNDEGMLSFTSGVVLPASNMKPAGGGGDSDHSDLEASVVKEVESSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLDPKVTTNNQTSKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQDQLRIALSSKVSDVR 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1321 604 SMART finulus 475 518 IPR011598 GO:0046983
Sto11g1321 604 MobiDBLite consensus disorder prediction 261 479 - -
Sto11g1321 604 MobiDBLite consensus disorder prediction 261 363 - -
Sto11g1321 604 Pfam Helix-loop-helix DNA-binding domain 473 508 IPR011598 GO:0046983
Sto11g1321 604 MobiDBLite consensus disorder prediction 387 402 - -
Sto11g1321 604 MobiDBLite consensus disorder prediction 403 418 - -
Sto11g1321 604 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 468 509 IPR036638 GO:0046983
Sto11g1321 604 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 67 252 IPR025610 -
Sto11g1321 604 Gene3D - 454 516 IPR036638 GO:0046983
Sto11g1321 604 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983
Sto11g1321 604 MobiDBLite consensus disorder prediction 436 479 - -
Sto11g1321 604 PANTHER MYC 517 601 IPR045084 GO:0003700|GO:0006355
Sto11g1321 604 PANTHER MYC 13 512 IPR045084 GO:0003700|GO:0006355
Sto11g1321 604 PANTHER TRANSCRIPTION FACTOR MYC2 13 512 - -
Sto11g1321 604 PANTHER TRANSCRIPTION FACTOR MYC2 517 601 - -
Sto11g1321 604 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1321 Sto-Chr11 12810157 12812199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1321 1 600 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.537 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto11g1321 bHLH-MYC_N 4.1e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1321 K13422 - qsu:112012448 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1321 11 12810157 12812199 Sto11g1321 11 12810157 12812199 ECH