Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1319 ATGGCCTCCGACAACTTCATCGACAAGAACGCTGTTTTCAGAAAACTTAAGGCAAAGTCCGATAATAAGATGTGTTTCGATTGTAATGCAAAAAATCCAACTTGGGCGTCCGTCACTTATGGAATCTTCCTCTGTATCGATTGCTCGGCTGTTCATCGCAGTCTTGGCGTGCACATCAGCTTTGTGAGatCTACAAATTTGGATTCATGGACTCCTGAGCAATTGAGATTGATGAGCTTTGGAGGAAACAATCGTGCACAAGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAGTATACGTCTAGAGCTGCAGAATTGTATAGACAAATCCTTGCAAAGGAAGTAGCCAAAAGTATGGCAGAGGAGGCAGATTTGCCATCATCACCTGTTGCTTCTCCATCTGCACAAGTTCCTAGTGGACTTCCTGATGTTATTACCAAAGAATCACTGAAAGAGAACACAGCCTCACATACAAATTTTTCCAGTAATTTAAAGAAGCCTATTGGTACGAGAAAGTCGGGAAAGAGTGGAGGCCTTGGTGCCCGCAAGCTTACTACAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAAGAACCACCTGTTCCAGtttcttcctcaacaaccaGCACATTGCTGGCTGGGCCATCTCTGACATCTCGGTTTGAGTATGTAGACAATGTCCAGTCTTCTGAGTTGAATTCTGGAGGTGCACATATTAGTCATGTGTCTCCGCCAAAGTCATCAAGTTTCTTTGCAGATTTTGGAATGGATAGTGGTTATCCAAAGAAATATGAGTCAAATCCCCCAAAAGTGGAAGTTGAGGAGTCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCAGCCCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGCTGCTCAAGTTACTTTGTCAAAGTTTTCAGGTTCAACTGCAATCTCCAGTGCCGATCTTTTTGGTGACCCAGCAGATAACTCCCCCATCGATATCACTGCTAATGACCTGCTCAATCGACTCACTTTCCAGGCCCAGCAGGATATCTCTTCCCTTAAAAGTATCGCCGGAGATACCGGAAAGAAGCTCAGCTCCCTCGCCTCCAATTTGATAACAGATCTCCAGGACAGAATTCTTTAA 1173 0.4297 MASDNFIDKNAVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRLMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILAKEVAKSMAEEADLPSSPVASPSAQVPSGLPDVITKESLKENTASHTNFSSNLKKPIGTRKSGKSGGLGARKLTTKPSESLYEQKPEEPPVPVSSSTTSTLLAGPSLTSRFEYVDNVQSSELNSGGAHISHVSPPKSSSFFADFGMDSGYPKKYESNPPKVEVEESDEARKKFSNAKSISSAQFFGDQNKAADVAAQVTLSKFSGSTAISSADLFGDPADNSPIDITANDLLNRLTFQAQQDISSLKSIAGDTGKKLSSLASNLITDLQDRIL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1319 390 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Sto11g1319 390 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Sto11g1319 390 MobiDBLite consensus disorder prediction 158 175 - -
Sto11g1319 390 MobiDBLite consensus disorder prediction 158 217 - -
Sto11g1319 390 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 390 - -
Sto11g1319 390 CDD ArfGap_ArfGap2_3_like 8 123 - -
Sto11g1319 390 Pfam Putative GTPase activating protein for Arf 12 108 IPR001164 GO:0005096
Sto11g1319 390 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Sto11g1319 390 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Sto11g1319 390 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Sto11g1319 390 Gene3D Arf GTPase activating protein 2 137 IPR038508 -
Sto11g1319 390 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 390 - -
Sto11g1319 390 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1319 Sto-Chr11 12788927 12792897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1319 13 91 C2H2 Transcription Factor Family AT4G21160 45.000 1.84e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1319 K12493 K11855 jcu:105637395 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1319 11 12788927 12792897 Sto11g1319 11 12788927 12792897 ECH