Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1314 ATGGATTACAGTCGAGACGGAAACGTCGTTCAAATCATCACCGGAGGCGGAAGCGAGAATTGGTCGAACGACCAAGCGATGTGGGCAACCGAAGAAGATTACCGGTTTTGGAACGACGGCGACACTGCATCGAACTCGAGTTACGATCAAAAGCAATCGCAATCTCGCGCGGGAAGCGAACCCCCGAACAAGAAATCGAGAAATTTCCAGGACGGTTCAGCAGCATCGTCCAATAATCGGTCCAAGGCAATCGGGAAGATGTTCTTCAAGACCAAGCTGTGCTGTAAGTTCCGTGCCGGCACGTGCCCCTACATCACCAACTGCAATTTCGCGCACAGCATCGAAGAGCTTCGTCGCCCTCCTCCCAATTGGCAAGAAATCGTGGCAGCCCACGAGGAAGAGAAAACGCCGCCGCCTCCGTCGTCGGAGCCAAGGGAGGAATTTCAGATTCCGTCAGTAGTGTCGTCGGGATTTGAGGGGGAAATGCAGAGGTCTTATAAAGGTAGACATTGCAAGAAGTTTTACACAGAAGAAGGGTGTCCTTATGGAGATAATTGTACATTTCTTCATGATGAACAATCCAAGAATAGAGAGAGTGTGGCTATAAGTCTAGGCCCTGGGTataatggtggtggtggtggtgctgCTGCTGCGGCTGCTGGTGGGAATGGAACTAATTCGAAGCCATCAAACTGGAAAACAAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGCCCATTTGGGAACAAATGCCATTTTGCTCATGGCTCTGCAGAACTGCACCGATATGGAGGTGGGCTTGTGGATGGAGAAAATAGAGACACTGCTTCGGCTGCTGGTGGCGCACCGGACACAAAGCAGGGAGTGGTAGCTTTGAAATCTGGTGCAGATACTGTGGTGGTAGCTTCAGTAACTCCAGTGGCTCATTCTGATGTGTATCATATGGGAGTTCCCTCACAAAGGCCTTCCATTGTGATGCAGAGGCCAGGACAGAGGGCTCATCAGAAATGGAAAGGTCCTGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTgaatag 1071 0.4827 MDYSRDGNVVQIITGGGSENWSNDQAMWATEEDYRFWNDGDTASNSSYDQKQSQSRAGSEPPNKKSRNFQDGSAASSNNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKTPPPPSSEPREEFQIPSVVSSGFEGEMQRSYKGRHCKKFYTEEGCPYGDNCTFLHDEQSKNRESVAISLGPGYNGGGGGAAAAAAGGNGTNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGSAELHRYGGGLVDGENRDTASAAGGAPDTKQGVVALKSGADTVVVASVTPVAHSDVYHMGVPSQRPSIVMQRPGQRAHQKWKGPDKISRIYGDWIDDIE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1314 356 ProSiteProfiles Zinc finger C3H1-type profile. 165 193 IPR000571 GO:0046872
Sto11g1314 356 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Sto11g1314 356 SMART c3hfinal6 165 192 IPR000571 GO:0046872
Sto11g1314 356 SMART c3hfinal6 231 258 IPR000571 GO:0046872
Sto11g1314 356 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Sto11g1314 356 Pfam CCCH-type zinc finger 169 191 IPR041367 -
Sto11g1314 356 MobiDBLite consensus disorder prediction 39 78 - -
Sto11g1314 356 ProSiteProfiles Zinc finger C3H1-type profile. 231 259 IPR000571 GO:0046872
Sto11g1314 356 SUPERFAMILY CCCH zinc finger 229 262 IPR036855 GO:0046872
Sto11g1314 356 Gene3D - 158 206 - -
Sto11g1314 356 Gene3D - 224 263 - -
Sto11g1314 356 Gene3D - 83 119 - -
Sto11g1314 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 257 IPR000571 GO:0046872
Sto11g1314 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Sto11g1314 356 PANTHER CCCH ZINC FINGER/TIS11-RELATED 15 353 IPR045877 GO:0003729
Sto11g1314 356 SUPERFAMILY CCCH zinc finger 164 193 IPR036855 GO:0046872
Sto11g1314 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 15 353 - -
Sto11g1314 356 SUPERFAMILY CCCH zinc finger 86 119 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1314 Sto-Chr11 12758528 12760922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1314 202 261 C3H Transcription Factor Family AT1G68200 38.333 2.60e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto11g1314 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1314 - - qsu:112034888 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1314 11 12758528 12760922 Sto11g1314 11 12758528 12760922 ECH