Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1303 ATGGACGGAGTTCATAACAGCGGCTCCAGCGGCGGGGCGCAGACGCCGGCTCCGGCGCCCATTCCTAATGCCAACGGGCCGCCGCCGTTTCTTAGTAAGACATATGACATGGTGGATGACCCGTCCAGTGATGCGATTGTGTCTTGGAGCTCAACCAACAATAGCTTTGTGGTTTGGAATCCACCCGAGTTTGCCAGGGACCTTTTGCCTAAGTACTTCAAGCACAATAACTTCTCTAGCTTTGTTAGGCAGTTGAACACATATGGTTTTAGGAAGGTCGATCCAGATCGTTGGGAATTTGCAAATGAGGGATTTTTGAGGGGTCAGAAGCACTTGCTTAAGAATATAACCCGGCGAAAACCTGCCCATGGTCATAGTAATCAACAAGCACAACAATCATCACATGGACAGAGTTCCTCTGTAGGGGCATGTGTAGAGGTTGGGAAATTTGGTCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAGGAACTCGTGAGGTTGCGACAGCAGCAACAGGCCACTGATAACCAGATGCAACAAATGGTTCAGCGCCTTCAAGGAATGGAACAACGTCAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGCTTCTTGGCTCAATTTGTACAACAGCAAAATGAAAGCAATAGGCGCATAACTGAAGCCAGCAAAAAACGTCGGCTTAAGCAGGAAGGTATTGCTGAAACAGAGCTTGCTTCTGCTCCTGATGGACAAATTGTTAAGTATCAACCTCTGATGAATGAAGCTGCAAAAGCAATGCTAAGGCAGATGATGAAATTGGATACTTCTCGGGTAGAATCTTTTGATAATAACTCTGATAATTACTTGGTTGCTGATGGCTCAATATCATCCACTGCGATGGACTGTGGCAGCTCTTCCAACCGGAGTTCTGGAGTAACCCTTCAAGAGGTCCCACCAACTTCAGTGAATGCCCCTTCAGCTGGCAAATCTGAAGTACAATCTTTTCCACAGTCTGCAGCTTCTGAAGAAGTTACCATTGCTCAATACCCAGATGTAAATGTGCTAGTTGGTGCATCTGAGGGACCTTCTATTCCTGTTTCTGATGTAGATGTCATCATGCCTGAGCTTTCTGCAATACCAGAGATAGTGACAGGAAATATTCTTGATATTCCCGGAGAGAACTATATGGGAGCTGAAACAGGAAATGATGGATATATGGATCCTACCTCATTGGGAATAAATGGGTCATTGCCCTTAGATATAGGTAGTATGTCACCTGATACAGATATTGATGACTTGTTGCGCAATTCTTCATTTTGGGATGACCTTGTGCAAAGTCCACTGCCAGAAGATATCGAGACTGATGCTGCTGAAGTGTCCCAGGGGAATGAGGTGCAGCCAATGGAAAATGGATGGGAGAAAGCTGAACATATGGACCAACTTACTGAGCAGATGGGTCTTCTTTCTTCTGATGCAAAAAGAGTTTGA 1500 0.456 MDGVHNSGSSGGAQTPAPAPIPNANGPPPFLSKTYDMVDDPSSDAIVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKNITRRKPAHGHSNQQAQQSSHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQMQQMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRRITEASKKRRLKQEGIAETELASAPDGQIVKYQPLMNEAAKAMLRQMMKLDTSRVESFDNNSDNYLVADGSISSTAMDCGSSSNRSSGVTLQEVPPTSVNAPSAGKSEVQSFPQSAASEEVTIAQYPDVNVLVGASEGPSIPVSDVDVIMPELSAIPEIVTGNILDIPGENYMGAETGNDGYMDPTSLGINGSLPLDIGSMSPDTDIDDLLRNSSFWDDLVQSPLPEDIETDAAEVSQGNEVQPMENGWEKAEHMDQLTEQMGLLSSDAKRV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1303 499 Pfam HSF-type DNA-binding 30 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1303 499 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 9 485 - -
Sto11g1303 499 MobiDBLite consensus disorder prediction 305 338 - -
Sto11g1303 499 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 485 IPR027725 -
Sto11g1303 499 MobiDBLite consensus disorder prediction 1 16 - -
Sto11g1303 499 SMART hsfneu3 26 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1303 499 MobiDBLite consensus disorder prediction 122 140 - -
Sto11g1303 499 MobiDBLite consensus disorder prediction 119 140 - -
Sto11g1303 499 Coils Coil 149 197 - -
Sto11g1303 499 SUPERFAMILY "Winged helix" DNA-binding domain 25 119 IPR036390 -
Sto11g1303 499 Gene3D - 23 120 IPR036388 -
Sto11g1303 499 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1303 499 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1303 499 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1303 499 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g1303 499 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1303 Sto-Chr11 12683261 12687293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1303 2 493 HSF AT1G32330 54.781 5.92e-171 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto11g1303 HSF_DNA-bind 2.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1303 K09419 - gmx:732544 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1303 11 12683261 12687293 Sto11g1303 11 12683261 12687293 ECH