Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1276 TTGCCACAGGTTCGCGCTGATTTGCAGATTGTGGGGGTTAAGCTCAGTTCGGCAGTTCCAGAACCAAGCATGGGTAAGAAGCAAGACAAAACCGCCACAATCAGCGAGCCAGTAGCCGAAGAAGCCCCCCACTACTCCGAAATCAaaacagagaagaagaaaaagaagaagaaagacaagCGAAACGAAGAAGCTAGTCCTAAAAGAAAGATCGAGGAAGTTGAGGTTCGGGATAGTTCTGAACCGGAaaggaagaagaataagaaggaTAAGAAGTCGAAAGAGAACGGAGTGGAAACCGAATCCGTTGAACGAAATGACGCAGAGAACGGTGTAGATGATGAGTCGGTGAGAGATGAGCATGTGGTGGTTACTGGGAAGAATATTAAAGATGAAAAATATGTGCCCACGAAAACTTTTGCCGCATCAGGGCTTCCAGAGAAAGTCTTGGAATGCTGCAAGAGTTTTGAAAAGCCTTCTCCAATTCAGTCCCGAGCGTGGCCTTTCTTGTTGGACGGTCGTGATTTAATTGGCATTGCGGCAACTGGGTCAGGGAAGACATTGGCTTTTGGAATACCGGCTATTATGCATGTTATGAGCAAGCGCAAGAGTAAAGTGTCAAAGGGTCGGAATCCTCTATGTCTTGTGCTTTCTCCTACGAGGGAGCTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGAGGTCTTGTGGTGTGGAATCTATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATATCTTCCTTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGCCGTATAAAGGATCTGATTGAAATGGGTGTTTGTAGCCTGAAAGAAGTTTCATTTGTGGTCCTTGATGAAGCGGATCGGATGCTTGACATGGGATTTGAGCAAGCAGTTCGCTCTATACTGGGTCAGACATGTTCCGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTCTACCAGTCCACAATTTAGCTCAAGAATTTATGGACCCTAATCCTGTCAAAGTTGTTGTCGGATCAGAGGATTTAGCTGCCAATCATGATGTGATGCAGATAGTTGAGGTCTTAGATGATCGTGCACGAGATAAGCGCCTGGTTGCTCTGCTAGAAAAGTACCACAAATCTCAAAAGAATCGAGTACTGGTTTTTGTTTTATACAAATTGGAAGCCTCACGAGTTGAAAAGATGCTCAATGAAGGGGGTTGGAAGGCTGTCTCAATACATGGGGACAAGGCACAATATGAACGTACTAAGGCACTAGCATTATTTAAGAACGGAAGCTGTCCTTTGATGATTGCAACTGATGTCGCTGCCCGGGGATTGGATATTCCAGACGTTGAAGTAGTAATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGCGAACAGGACGAGCTGGGAAGAAAGGTGTTTCCCATACATTCTTCACACAACAGAACAAGGGACTTGCTGGGGAGCTAGTAAATGTTTTAAGAGAAGCAGGGCAAGTTGTGCCAGATGCACTATTGAAATTTGGCACGCATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAGATTTCTGCCGATGCTCCCAAGTCGCAAAAAATCACGTTTGACAACTCTGATGAAGATTGA 1671 0.4345 LPQVRADLQIVGVKLSSAVPEPSMGKKQDKTATISEPVAEEAPHYSEIKTEKKKKKKKDKRNEEASPKRKIEEVEVRDSSEPERKKNKKDKKSKENGVETESVERNDAENGVDDESVRDEHVVVTGKNIKDEKYVPTKTFAASGLPEKVLECCKSFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVMSKRKSKVSKGRNPLCLVLSPTRELAQQISDVMCDAGRSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIKDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQAVRSILGQTCSVRQMVMFSATWPLPVHNLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLVALLEKYHKSQKNRVLVFVLYKLEASRVEKMLNEGGWKAVSIHGDKAQYERTKALALFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREAGQVVPDALLKFGTHVKKKESKLYGAHFKEISADAPKSQKITFDNSDED 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1276 556 Pfam Helicase conserved C-terminal domain 372 481 IPR001650 -
Sto11g1276 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 138 164 IPR014014 GO:0003724
Sto11g1276 556 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 41 542 - -
Sto11g1276 556 Gene3D - 348 523 IPR027417 -
Sto11g1276 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 494 IPR027417 -
Sto11g1276 556 CDD SF2_C_DEAD 358 490 - -
Sto11g1276 556 PANTHER BNAA08G07020D PROTEIN 41 542 - -
Sto11g1276 556 SMART ultradead3 155 361 IPR014001 -
Sto11g1276 556 SMART helicmild6 400 481 IPR001650 -
Sto11g1276 556 Gene3D - 84 347 IPR027417 -
Sto11g1276 556 Pfam DEAD/DEAH box helicase 161 330 IPR011545 GO:0003676|GO:0005524
Sto11g1276 556 MobiDBLite consensus disorder prediction 12 120 - -
Sto11g1276 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 344 IPR014001 -
Sto11g1276 556 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 290 298 IPR000629 -
Sto11g1276 556 MobiDBLite consensus disorder prediction 57 120 - -
Sto11g1276 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 373 520 IPR001650 -
Sto11g1276 556 CDD DEADc 156 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1276 Sto-Chr11 12495455 12502794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1276 136 489 Eukaryotic Initiation Factors Gene Family AT3G19760 32.584 1.50e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1276 K14811 - gmx:100806057 835.099